Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g2056 | GCTTCTACTACTGGTCTTGTAGTTGGATCTCTTGTTTGGTTGGAGGATTCTGAAGAAGCTTGGATAGAGGGTGAAGTTTTAGAAATTCGTGGCGAAGATATTAAGGTCCTATGCACATCAGGGAAAACGGTTGTAGTTAAAGCAGCTAATGTCTATCCCAAAGATTCCGAAGTGCCACCTTGTGGGGTGGATGACATGACCAAGTTGGCTTACTTGCATGAACCAGGGGTGCTACACAATTTAAAATTGAGATATGATATCAATGAAATATATACTTATACAGGGAACATATTGATTGCTGTGAACCCTTTTACAAGGTTACCTCATCTCTATGATAGCTATATGATGGCACAATATAAAGGGGCCGCATTCGGTGAGCTGAGTCCACATCCATTTGCAGTTGCAGATGCTGCCTACAGACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACAAAGTTGCTTATGCGTTATCTTGCATATATGGGAGGGAGAGCTGCTGCTGAGGGGAGGTCTGTTGAGCAGCAAGTTCTGGAGTCAAATCCTGTTTTAGAGGCATTTGGGAATGCCAAGACTGTTCGGAACAACAACTCAAGTCGATTCGGTAAGTTTGTGGAGATCCAATTTGACCAAAGCGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTGGAAAGATCACGTGTTTGTCAGGTGTCTGATCCAGAGAGAAATTATCATTGCTTCTACATGCTTTGTGCTGCACCACCTGAGGAGGTCAAGAAGTATAAATTGGGAAACCCAAGAACTTTCCATTATCTAAATCAATCAAACTGCTATGAGTTGGATGGAATTGATGATGCCAAGGAATATATTGCAACAAGAAAAGCAATGGAAGTTGTTGGAATCAGTTCGGATGAGCAGGATGGAATATTTCGTGTTGTGGCCGCAATCCTTCATCTCGGAAACATTGAATTTGCAAAAGGGAAGGAGGCTGATTCTTCTGTTCCCAAAGACGAAAAATCTTGGTTCCATCTTAGAACTGCTGCCGAGCTTTTCATGTGTGATGAAAAGGCCCTGGAAGATTCTCTTTGCAAACGTGTGATCGTCACTCGTGACGAAACCATCACGAAGTGGCTAGATCCAAATTCTGCAGCTCTTAGCAGAGATGCTCTGGCAAAAATTGTGTACTCAAGGCTGTTTGACTGGCTGGTGGACAAAATTAATAATTCAATTGGCCAGGACCCTGATTCAAAGTTCTTGATTGGAGTGCTAGATATCTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTCAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTACACAAAAGAGGAAATTGATTGGAGTTATATTGATTTTGTTGATAATCAAGATGTCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCACGAAACATTTGCTCAAAAGTTGTATCAGACATTCAAAAATCATAAACGCTTCAGCAAACCGAAATTAGCGCGGAGTGACTTCACAATTTGTCATTATGCTGGTGATGTCACCTATCAGACTGATTTATTTCTGGACAAAAATAAAGACTATGTTGTTGCTGAACATCAAGCGCTCTTGAGTGCTTCCAAATGCTCCTTTGTGTCGTGTTTGTTTCCTCCATTAGCTGAAGAATCATCCAAATCTTCAAAGTTCTCATCAATAGGTTCTCGTTTCAAGCTACAATTGGTATCACTGCTGGAAACTCTAAGTGCTACTGAACCCCATTATATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTGCTATCTTTGAGAATAAAAATATATTGCAACAACTACGATGTGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCTGGTTTTCCAACAAGGAAAACATTTGATGAATTTGTTGACCGATTTGGACTCCTTGCACCTGAAGTTTTGGATGGGAGTTCTGATGAAGTGGCTGCTTGCAAGAGGCTTCTAGAGAAGGTTGGACTTAAAGGATACCAGATTGGTAAGACAAAGGTGTTTCTTAGAGCCGGTCAGATGGCTGAACTTGATGCGCTCAGGACTGAGATCTTAGGGAGATCAGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATTTGGCACGTAAAAGTTTTGTATTGCTTCGGAGGTCAGCTATACATCTACAATCTGCATGTAGAGGACAACTTGCTCGACAAGTATTTGAGGGCATGAGGAGGGAAGCTTCTTCTATAATGATTCAAAGGAATCTGCGCATGCATCTCTGCAGGAAAGCTTACAAAGAAAAGTACTCTTCAGCTGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCAATGAGCTACGCTTCAGAAGGCGCACTAAAGCAGCAATTATTATCCAGAGCTACTGTCGCAGATATTTGGCTCAGTTGCACTATAAGAAGTTAAAGAAAGCAGCAATCACCACTCAATCTGCATGGAGAGGAAGAGTTGCTCGTAAGGAACTACGGAAGTTGAAGATGGCTGCAAGGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAACATGGAGACTGCAGCTGGAGAAGCGCATGAGGGCTGACTTGGAAGAAGCTAAAACACAAGAAAATGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGGTTCAGTTGAAAGAAACAAAAGCAATGTTTGAGAAGGAACGTGAAGCTGCAAAGAAGGCTGCAGATATTATTCCAATTGTGAAGGAGGTTCCAGTTCTTGATAATGCAATGATTGAGAAAATTTCCAGTGAAAATGAAAAGCTCAAGTCGTTGGTAAGTTCACTGGAAAAGAAAATTGATGAAACAGAGAAAAAATATGAAGAGGCGAACAGAGTTAGTGAAGAAAGGTTGAAGCAAGCATCAGAGGCAGAAACAAAAATTATTCAATTAAAAACTGCAATGCAGAGGCTTGAAGAAAAATTCTCAAATGTTGAATCTGAAAATCAGATTCTTCGGCAGCAGACCTTCCTGAAAACACCGGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGCAGCAGAGAAATTGGAAAATGGTAACCATTTGATTGAAGATAATAACAGAATCGAGGAGCAGTTTGTTACACCCGTGAAAACACTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCGCATTTTGAACACCAACAAGAGAATGTTGATGCTCTTGTCAGTTGTGTCATCAATAACATTGGGTTTAGTAATGGGAAGCCTGTAGCTGCATTTACCATTTATAAATGCCTCCTTCACTGGAAATCTTTTGAAGCCGAAAAAACAAGTGTATTTGATCGCCTAATTCAGATGATTGGATCTGCAATAGAGAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCAAACACATCTGCTCTACTATTCTTGCTTCAACGAAGCTTGAAAGCTGCTGGTGCTCCCCGAAAACCGCCAACTTCAACATCCATATTTGGAAGAATGACTATGGGTTTTCGTTCGTCTCCTTCTTCCAGCAATCTTGGATCTGCACTTAAGGTAGTACGCCAAGTGGATGCTAAATATCCAGCATTGCTATTCAAGCAGCAGTTGACAGCATATGTCGAAAAAATATTCGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACGTCATTGCTTTCCTTGTGTATCCAAGCACCAAGAACATCAAAAGGAGTATTACGATCCGGAAGATCGTTTGGGAAAGATACTCATACAAATTACTGGCAAAGCATCATAGAAAGCCTTAACATGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCGCAAATACTTATCCAGAATATCTTCGTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGTCTCCTCCTTCGTCGAGAATGTTGTACATTCAGCAATGGCGAATATGTAAAATCTGGGTTAGCCGAGTTGGAGCTCTGGTGTTGCCAGGCAAAAGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGAATTTCCTATGATGAAATCACCAATGATCTTTGCCCTATCCTGAGTGTCCAGCAACTTTATAGAATATGTACACTCTACTGGGACGATAACTATAACACTCGAAGCGTATCGCCAGATGTAATATCCAGTATGAGAGTGCTCATGACTGAGGACTCCAACAATGCAGTCAGCAGTTCCTTCCTATTGGATGACAATTCCAGCATCCCCTTCTCGGTCGAAGACCTCTCAAACTCGCTGCAAGAGAAAGATTTCTCCGGCGTAAAGCCTGCCGACGAACTACTTGAGAACCCAGCCTTCCAATTTTTACACGAGTGA | 4527 | 40.93 | ASTTGLVVGSLVWLEDSEEAWIEGEVLEIRGEDIKVLCTSGKTVVVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTRLPHLYDSYMMAQYKGAAFGELSPHPFAVADAAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEEVKKYKLGNPRTFHYLNQSNCYELDGIDDAKEYIATRKAMEVVGISSDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLRTAAELFMCDEKALEDSLCKRVIVTRDETITKWLDPNSAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTDLFLDKNKDYVVAEHQALLSASKCSFVSCLFPPLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPAIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVAACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARKSFVLLRRSAIHLQSACRGQLARQVFEGMRREASSIMIQRNLRMHLCRKAYKEKYSSAVSIQTGMRGMAARNELRFRRRTKAAIIIQSYCRRYLAQLHYKKLKKAAITTQSAWRGRVARKELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALQDMQVQLKETKAMFEKEREAAKKAADIIPIVKEVPVLDNAMIEKISSENEKLKSLVSSLEKKIDETEKKYEEANRVSEERLKQASEAETKIIQLKTAMQRLEEKFSNVESENQILRQQTFLKTPVKKMADHLPIAAAEKLENGNHLIEDNNRIEEQFVTPVKTLKRISSESEIKLSRSHFEHQQENVDALVSCVINNIGFSNGKPVAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAAGAPRKPPTSTSIFGRMTMGFRSSPSSSNLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTSLLSLCIQAPRTSKGVLRSGRSFGKDTHTNYWQSIIESLNMLLCTLKENFVPQILIQNIFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFSGVKPADELLENPAFQFLHE | 1508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 40215470 | 40233128 | - | Lag0002176.1 | Lac4g2056 | 605588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g2056 | 1508 | SMART | iq_5 | 852 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | SMART | iq_5 | 829 | 851 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | SMART | iq_5 | 733 | 755 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | SMART | iq_5 | 756 | 778 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | SMART | iq_5 | 804 | 826 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | SMART | iq_5 | 781 | 803 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 32 | 785 | IPR027417 | - | |
| Lac4g2056 | 1508 | CDD | MyosinXI_CBD | 1110 | 1477 | IPR037975 | GO:0007015(InterPro) | |
| Lac4g2056 | 1508 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 7 | 56 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | Pfam | Myosin N-terminal SH3-like domain | 8 | 50 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | Coils | Coil | 876 | 949 | - | - | |
| Lac4g2056 | 1508 | PANTHER | MYOSIN | 828 | 1453 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lac4g2056 | 1508 | SMART | DIL_2 | 1329 | 1436 | IPR002710 | - | |
| Lac4g2056 | 1508 | Gene3D | - | 438 | 622 | - | - | |
| Lac4g2056 | 1508 | FunFam | Class V myosin | 438 | 583 | - | - | |
| Lac4g2056 | 1508 | Pfam | Myosin head (motor domain) | 63 | 719 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | ProSiteProfiles | IQ motif profile. | 830 | 859 | - | - | |
| Lac4g2056 | 1508 | Gene3D | - | 666 | 730 | - | - | |
| Lac4g2056 | 1508 | CDD | MYSc_Myo11 | 75 | 719 | IPR036018 | - | |
| Lac4g2056 | 1508 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 311 | 600 | - | - | |
| Lac4g2056 | 1508 | FunFam | Myosin XI D | 734 | 783 | - | - | |
| Lac4g2056 | 1508 | ProSiteProfiles | IQ motif profile. | 805 | 834 | - | - | |
| Lac4g2056 | 1508 | FunFam | unconventional myosin-Va | 784 | 832 | - | - | |
| Lac4g2056 | 1508 | ProSiteProfiles | IQ motif profile. | 782 | 811 | - | - | |
| Lac4g2056 | 1508 | SMART | MYSc_2a | 56 | 732 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | FunFam | Myosin heavy chain | 251 | 306 | - | - | |
| Lac4g2056 | 1508 | PRINTS | Myosin heavy chain signature | 195 | 222 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | PRINTS | Myosin heavy chain signature | 428 | 456 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | PRINTS | Myosin heavy chain signature | 481 | 509 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | PRINTS | Myosin heavy chain signature | 91 | 110 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | PRINTS | Myosin heavy chain signature | 148 | 173 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | ProSiteProfiles | Dilute domain profile. | 1159 | 1454 | IPR002710 | - | |
| Lac4g2056 | 1508 | Pfam | IQ calmodulin-binding motif | 758 | 777 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | Pfam | IQ calmodulin-binding motif | 831 | 851 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | Pfam | IQ calmodulin-binding motif | 784 | 803 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | Pfam | IQ calmodulin-binding motif | 736 | 754 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | Pfam | IQ calmodulin-binding motif | 855 | 874 | IPR000048 | GO:0005515(InterPro) | |
| Lac4g2056 | 1508 | ProSiteProfiles | IQ motif profile. | 853 | 882 | - | - | |
| Lac4g2056 | 1508 | Pfam | DIL domain | 1330 | 1434 | IPR002710 | - | |
| Lac4g2056 | 1508 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 786 | 882 | IPR027417 | - | |
| Lac4g2056 | 1508 | FunFam | Myosin 2 | 311 | 423 | - | - | |
| Lac4g2056 | 1508 | Gene3D | - | 784 | 832 | - | - | |
| Lac4g2056 | 1508 | Gene3D | - | 734 | 783 | - | - | |
| Lac4g2056 | 1508 | Gene3D | - | 833 | 881 | - | - | |
| Lac4g2056 | 1508 | ProSiteProfiles | IQ motif profile. | 757 | 786 | - | - | |
| Lac4g2056 | 1508 | FunFam | unconventional myosin-Va | 833 | 880 | - | - | |
| Lac4g2056 | 1508 | ProSiteProfiles | Myosin motor domain profile. | 61 | 731 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g2056 | 1508 | Gene3D | - | 251 | 309 | - | - | |
| Lac4g2056 | 1508 | Gene3D | Kinesin motor domain | 64 | 661 | IPR036961 | - | |
| Lac4g2056 | 1508 | Coils | Coil | 971 | 1047 | - | - | |
| Lac4g2056 | 1508 | ProSiteProfiles | IQ motif profile. | 736 | 760 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g2056 | Lac-Chr4:40215470 | Lac7g0513 | Lac-Chr7:4083896 | 0.00E+00 | dispersed | |
| Lac4g2056 | Lac-Chr4:40215470 | Lac4g0495 | Lac-Chr4:11472923 | 1.40E-29 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac4g2056 | K10357 | - | csv:101208630 | 2848.15 |