Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2074 ATGGCCGGCTTGGTCACCGGTTCCCAAAACCATCCCCATACTGCCGACGAGAGTCTTCGCGGTCCTCCATCGTCGTCCAAAACATGTCGAGTTTGTGGCGATGAGATAGGACTCAAAGAAGATGGAAAAGTATTCGTGGCGTGTCTTGTGTGCAATTTCCCTGTTTGTCGTCCTTGTTATGAGTATGAAAGGAGCGAAGGCAACAAGTGTTGTCCCCAATGCAACACTCGCTACAAGCGTCACAAAGGCTCTCCAAGAATCGTTGGTGATGATGAAGAAGCCTATGATGTAGATGATTTTGATGATGAATTTCCTATTAAGCAGCACAACGAAGAATTTGACACAAAACAACCAAATCATGTGGAAAACGATAACTACAACCAGCAGAATTGGCATCAAAATTTGCAGACATCCATCTCAGTTGCAGGCAGTGTGAACGGCAAGGATTTCGAAGGCGAGAAGGAGGGTTACGGGAATGCAGAATGGAAGGAGAGAATCGATAAATGGAAACTGAGGCAAGAGAAGAGAGGTTTGGGAAACAAAGAAGATGGAAGCAACAACGATCAAGGCGAAGAAGATGAGTACCTATTAGCAGAAGCCCGGCAGCCGCTATGGCGGAAACTTCCAATATCGTCGAGCAAAATCAGTCCATACCGCATAGTAATAGTCCTCCGCCTCGTGATTCTCGCATTCTTCTTCCGCTTCCGGATCCTAACTCCGGCGTACGACGCGTTTCCCCTATGGCTCATCTCGGTGATCTGCGAGATCTGGTTCGGGTTCTCGTGGATTCTGGACCAGTTCCCGAAGTGGGCGCCGATCAACCGGGAGACGTACCTGGACCGGCTGTCGATGAGGTTCGAGCGGGAGGGGGAGGCGAACCGGCTTGCGCCGATCGACTTCTTCGTGAGTACGGTGGATCCTCTGAAGGAGCCGCCGATCATAACGGCGAACACGGTGCTGTCGATTTTGTCGGTGGACTATCCGGTGGAGAAGGTGAGCTGCTACGTGTCGGACGACGGAGCGTCGATGCTGCTGTTCGACACGCTGGCGGAGACGGCGGAGTTTGCGAGGAGATGGGTGCCGTTCTGCAAGAAGTTCAACGTGGAGCCGCGGGCTCCGGAGTTTTACTTCTCGCAGAAGATGGATTACTTGAAGGACAAGGTGGTGGCGAGCTTTGTGAAGGAGAGGAGGGCGATGAAGAGAGAATACGAAGAGTTCAAGGTGAGAATCAATGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAGGATGGGACTCCATGGCCGGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGATGTAGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTTGTTCGTGTCTCTGCAGTTCTCACAAATGCGCCATTCATCTTGAATCTGGATTGTGATCACTACGTCAACAATAGCAAGGCTGTACGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATCGTCACGACAGATACGCTAATCGGAATATCGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATCCAAGGCCCGGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCTCCAGTCTCTGAGAAAAGGCCAAAGATGACATGCGATTGCTGGCCTTCCTGGTGCTGCTGTTGCTGCGGTGGTTCGAGGAAGTCGAAGTCGAAGAAGACAGGGAAAAGAGGTTTGCTTGGAGGCTTGTTCTCAAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGGGTCTGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTTGAAGGTTATGATGAATTGGAGAAGTCAACACTCATGTCGCAAAAGAATTTTGAGAAAAGATTCGGGCAGTCACCAGTTTTCATCGCTTCCACCCTGAAGGAAGATGGTGGTCTTCCAGAAGGGACTAACAGCACATCACTAGTTAAAGAAGCCATCCATGTAATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTATGGTTCTGTCACTGAAGATATTTTGACAGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTTTACTGCATGCCAAAGAGACCAGCTTTCAAGGGATCGGCTCCAATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTCGAGATCTTCCTCAGTCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTTGAGAGGCTTGCCTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACTTTGACGAACTTAGCTAGTGTCTGGTTCATGGCCCTGTTCATTTCCATCATTGCTACAGCCGTACTGGAGCTTCGATGGAGTGAAGTGAGCATCGAAGACTTGTGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTCTCTGCACATCTTTTTGCAGTGTTCCAAGGCCTGCTCAAGGTCCTTGGTGGAGTGGACACCAACTTCACAGTTACAGCAAAAGCAGCCGAAGACACCGAGTTTGGAGAGCTCTATCTCTTCAAGTGGACGACCCTCCTCATCCCGCCGACCACTCTCATAATCTTGAACATGGTGGGAGTTGTTGCTGGAATTTCAGATGCAATCAACAATGGCTACGGCTCATGGGGTCCTCTATTTGGAAAGCTGTTTTTCGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGGCAAAACAGGACTCCTACCATTGTTGTCCTCTGGTCCGTGCTTCTTGCATCCATATTTTCACTGGTTTGGGTCAGAATCGATCCCTTCCTGCCCAAGCAAACCGGTCCTGTCCTCAAACAATGTGGAGTGGATTGCTAG 3123 48.41 MAGLVTGSQNHPHTADESLRGPPSSSKTCRVCGDEIGLKEDGKVFVACLVCNFPVCRPCYEYERSEGNKCCPQCNTRYKRHKGSPRIVGDDEEAYDVDDFDDEFPIKQHNEEFDTKQPNHVENDNYNQQNWHQNLQTSISVAGSVNGKDFEGEKEGYGNAEWKERIDKWKLRQEKRGLGNKEDGSNNDQGEEDEYLLAEARQPLWRKLPISSSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFEREGEANRLAPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFNVEPRAPEFYFSQKMDYLKDKVVASFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKTGKRGLLGGLFSKKKKMMGKSYVRKGSGPVFDLEEIEEGFEGYDELEKSTLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGISDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40429848 40435221 + Lag0002194.1 Lac4g2074 605606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2074 1040 CDD mRING-HC-C4C4_CesA 27 77 - -
Lac4g2074 1040 MobiDBLite consensus disorder prediction 1 26 - -
Lac4g2074 1040 Coils Coil 396 416 - -
Lac4g2074 1040 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 590 IPR029044 -
Lac4g2074 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 218 1009 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lac4g2074 1040 SUPERFAMILY Nucleotide-diphospho-sugar transferases 311 851 IPR029044 -
Lac4g2074 1040 FunFam Cellulose synthase 415 589 - -
Lac4g2074 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 103 IPR013083 -
Lac4g2074 1040 SUPERFAMILY RING/U-box 24 94 - -
Lac4g2074 1040 Pfam Cellulose synthase 298 1033 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lac4g2074 1040 FunFam Cellulose synthase 13 103 - -
Lac4g2074 1040 MobiDBLite consensus disorder prediction 7 25 - -
Lac4g2074 1040 Pfam Zinc-binding RING-finger 25 93 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0971 Lac-Chr10:7788129 Lac4g2074 Lac-Chr4:40429848 0.00E+00 dispersed
Lac4g2074 Lac-Chr4:40429848 Lac4g2655 Lac-Chr4:45532891 0.00E+00 dispersed
Lac4g2074 Lac-Chr4:40429848 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2074 K10999 - csv:101205733 1949.1