Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g2083 | ATGGACGCTTGGTTAACAGCTCTCGCCGCGCTCTCCATCTGTGTGCTCTGTAATTTCGTTCTGGGCTTCATCTTTTCCAGCAAACCAAAACTCCCACCTGGTCCACTCGCCTTGCCTCTCATCGGCAACCCCATATGGCTCTTCAAGCCACTCTCCGAACTCGAAACCATCCTCCGCAATTACCACTCCAAGTACGGCCCCGTCGTCACGCTCCACTTCGGCACCACTCCCTCCATCTTCATCGCCAGCCACTCTGTTTCCCACCAGGCATTGGTTCAGAACGGCGCCGTCTTCGCCGACCGCTTCCCCGTCATGGAGACCGCCAAAATCATCACCAGCAACCAGCACAACATCAGCACCGCCTTCTACGGCCCCACCTGGCGGACCCTCCGCCGCAACCTCACCGCCGAGCTCCTCCACCCCTCTCGCTTGAAGGCTCACGCGCCCTCTCGCAAGTGGGTTTTGGACGTCCTGGTCCAGCGCCTCCTCCAAGAATCCCAGCCCACGTCGCTTTCTCAAGGCCCACTTCCCGTCAGACTCATCGACCATCTCCGTCACGCGATGTTCTGCCTCGCCGCCGCCATGTGTTTCGGGGAGAGATTCGACGGGAAGTTGATCAACGAAATCCAAGAGGCCCAACGTGGGGTGTTGTTGAACATCAACAAATTCAACGACCTCAATTTCTGGCCGCCAAAACTCGGGAAGGTTCTGTTCCGGAAGCGTTGGGATGAGATTCGTCAGCTGCGTAAGCGGCAAGACGATCTGTTACTTCCTCTGATCAACGCGAGGAAGAAGGCCGTCGAGGAAGAGCGCGGCCGTGGACCCAAGGACGAGAAGGCAATCCCGTACGTCGACACTCTGTTCGATCTCGAAATCACGGACGACAGCAGCGATGAGAAGAGAAAGAGAAAACTGTCAGAAGATGAACTGATAACACTATGCTCGGAGTTTATCGACGCCATCACGGATACCACGACGGTGTCGCTGCAATGGATAATGGCGAATTTGGTGAAGTACCCGGAAGTTCAAGAGAAGGTGTTCGCGGAGATAAAGGAAACGATGGGAAAGAAGGAGGAGATCGAGGAGGAAGATTTGCAGATGATGACGTATCTGAAGGCGGTGGTGCTGGAAGGGCTGCGGCGGCACCCGCCGGGGCACCTGCTGCTGCCGCATAAGGTGATGGAGGAGAGTGTTCTGGAGGGAGGGTACAGGGTGCCGAAAGGGACGTCGGTGAATTTCATGGTGGCGGACATGGGGTGGGACCCGAAGGTGTGGGCGGAGCCGATGGAGTTCAAGCCGGAGAGGTTCTTGGCGGAGAGGGGGGAGGGAGGGGTGGAGGTGGAAGTGGATATTACGGGTAGTAAGGAGATAAAGATGATGCCTTTTGGGGCAGGGAGGAGGTTCTGCCCGGGATTTGCGTTGGGGTTGCTTCATTTGGAGTATTATGTGGGGAACTTGGTGTGGAATTTCAAGTGGACGGCGGCGGGGGAGGTCGACCTGTCTGAGAAACAGGAGTCTGCTATCACCATGAAACATCCAGTGCTCTCTTACTTGTCGCCGAGGGCTGTTTCAAGTTGTTGA | 1581 | 56.48 | MDAWLTALAALSICVLCNFVLGFIFSSKPKLPPGPLALPLIGNPIWLFKPLSELETILRNYHSKYGPVVTLHFGTTPSIFIASHSVSHQALVQNGAVFADRFPVMETAKIITSNQHNISTAFYGPTWRTLRRNLTAELLHPSRLKAHAPSRKWVLDVLVQRLLQESQPTSLSQGPLPVRLIDHLRHAMFCLAAAMCFGERFDGKLINEIQEAQRGVLLNINKFNDLNFWPPKLGKVLFRKRWDEIRQLRKRQDDLLLPLINARKKAVEEERGRGPKDEKAIPYVDTLFDLEITDDSSDEKRKRKLSEDELITLCSEFIDAITDTTTVSLQWIMANLVKYPEVQEKVFAEIKETMGKKEEIEEEDLQMMTYLKAVVLEGLRRHPPGHLLLPHKVMEESVLEGGYRVPKGTSVNFMVADMGWDPKVWAEPMEFKPERFLAERGEGGVEVEVDITGSKEIKMMPFGAGRRFCPGFALGLLHLEYYVGNLVWNFKWTAAGEVDLSEKQESAITMKHPVLSYLSPRAVSSC | 526 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 40530483 | 40532063 | + | Lag0002203.1 | Lac4g2083 | 605615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g2083 | 526 | CDD | CYP77_89 | 64 | 513 | - | - | |
| Lac4g2083 | 526 | SUPERFAMILY | Cytochrome P450 | 30 | 521 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 16 | 517 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Lac4g2083 | 526 | Gene3D | Cytochrome P450 | 25 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | FunFam | Cytochrome P450 family protein | 25 | 523 | - | - | |
| Lac4g2083 | 526 | PRINTS | P450 superfamily signature | 320 | 337 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | P450 superfamily signature | 460 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | P450 superfamily signature | 469 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | P450 superfamily signature | 373 | 384 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 187 | 205 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 329 | 355 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 459 | 469 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 309 | 326 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 372 | 390 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 414 | 438 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | PRINTS | E-class P450 group I signature | 469 | 492 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g2083 | 526 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 462 | 471 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac4g2083 | 526 | Coils | Coil | 343 | 363 | - | - | |
| Lac4g2083 | 526 | Pfam | Cytochrome P450 | 32 | 511 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g1633 | Lac-Chr2:14620001 | Lac4g2083 | Lac-Chr4:40530483 | 4.20E-30 | dispersed | |
| Lac4g2083 | Lac-Chr4:40530483 | Lac9g1469 | Lac-Chr9:33061015 | 1.40E-162 | dispersed | |
| Lac4g2082 | Lac-Chr4:40524930 | Lac4g2083 | Lac-Chr4:40530483 | 2.50E-47 | tandem | |
| Lac4g2083 | Lac-Chr4:40530483 | Lac4g2084 | Lac-Chr4:40534507 | 3.90E-48 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac4g2083 | K24184 | - | csv:101204774 | 739.184 |