Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2084 ATGAACTGGGCTTCCATGGAAACAGCCATTACCACCCACTTTCAACTCTTAATTCCTTTCTTCCTTTTCATTTTCACAATCTTTCTGTTGCAGAGAAGGAAACCCACAACCAAAAATCTTCCTCCCAGCCCTCTCGCCCTCCCCGTCATCGGCCATCTCCATCTCCTCAAGCACCCCATCCACAGAACTCTACAGACTCTCTCACAAAAGCACGGCCCCATTTTCACCCTCCGCCTCGGCTCCCGTCTCGTCGTCGTCGTCTCCTCCACCTCCGCCGTCGAAGAATGCTTCACCACCAACGACATCGTCTTCGCCAACCGCCCGGAGTTCGTTTCCGGCAAGTACCTCACCTACGGCAACAGCACCCTCGGAGCCGCCCCCTACGGCGACCACTGGCGCAACCTTAGGCGGCTGAGCGCCACGGAGGTCCTCTCGTCGATCCGACTGAACTCGTCGGCGGGGATCCGGAGGGAGGAAATCGGTATTCTACTGCGGAAGCTGCATCGAGTTTCGGGGGACGATTTCGGAAGGGTGAAGTTGAAATCGCTGTTTTCGGAGTTGACGTTCAATATAATAATGAGAATGGTGGCCGGAAAACGGTACTACGGCGAGGAAGTGGCGGAGTTGGAAGAGGCGAAGAAGTTCAGAGAAATCATGGAGAAGGCGTTTCAATTGGGGTCGTATCCAGGGGATTTCTTGCCGTTTCTGAAGTGGGTGGATCGTCAGTACACGAAACGGGTGGAAAGTCTGGGGAGAGACACGGATGGGTTCTTGCAGAATTTGGTGGATGAACATCGGAGAGACGAAGGGGAAGGGAAAAAGATGAATACGATGATCAGTCATCTGCTCTGTTTGCAGAAGACTCAGCCTGATTATTACACAGATGAAATCATCAAAGGCCTTATCGTTACAATTTTATCAGCAGCAACAGAAACATCCTCGGTGACAATAGAGTGGGCAATGTCGAATCTACTCAACCATCCCGAAGCACTAAACAAAGTAAAGGACGAACTGGACAAACACATCGGCCAAGAGCGGTTCGTGGAAGAAGACGACATTCCCAATCTACAATACTTACAGAACGTGATTTCGGAGACACTTCGCCTATATCCAGCAGCTCCACTCCTAGCTCCACATCTCTCCTCGGACAGTTGTTCTCTCGGAGGCTACCACATTCCTCCAGACACCATCTTGATGGTCAACGCCTGGGCCGTCCAAAGGGACCCCAAAGTTTGGGATGACTCGACCAGCTTCAAACCAGAGAGGTTCCAAAATGGCGGATCGGCACCCAACAACGCCTACAAGTTCTTGCCCTTTGGACTGGGCAGAAGGGCTTGCCCTGGGATGGGCATGGCCAACCGTGTGGTGGGCTTGACTTTGGGGTCGTTGATTCAGAGTTTTGAGTGGAAGAGGCTCGGCGGAAAGGAGATTGACATGACTGAAGGCCAAGGAATCTCCATGCCTAAAGTTGAGCCCTTGGAGGCCTTGTGTAAAGCTCGCCCCATCATGAAAAAGCTTGCGTCTGATACCATTAATTAG 1539 52.05 MNWASMETAITTHFQLLIPFFLFIFTIFLLQRRKPTTKNLPPSPLALPVIGHLHLLKHPIHRTLQTLSQKHGPIFTLRLGSRLVVVVSSTSAVEECFTTNDIVFANRPEFVSGKYLTYGNSTLGAAPYGDHWRNLRRLSATEVLSSIRLNSSAGIRREEIGILLRKLHRVSGDDFGRVKLKSLFSELTFNIIMRMVAGKRYYGEEVAELEEAKKFREIMEKAFQLGSYPGDFLPFLKWVDRQYTKRVESLGRDTDGFLQNLVDEHRRDEGEGKKMNTMISHLLCLQKTQPDYYTDEIIKGLIVTILSAATETSSVTIEWAMSNLLNHPEALNKVKDELDKHIGQERFVEEDDIPNLQYLQNVISETLRLYPAAPLLAPHLSSDSCSLGGYHIPPDTILMVNAWAVQRDPKVWDDSTSFKPERFQNGGSAPNNAYKFLPFGLGRRACPGMGMANRVVGLTLGSLIQSFEWKRLGGKEIDMTEGQGISMPKVEPLEALCKARPIMKKLASDTIN 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40534507 40537449 - Lag0002204.1 Lac4g2084 605616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2084 512 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac4g2084 512 Gene3D Cytochrome P450 26 499 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 Pfam Cytochrome P450 41 489 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 FunFam Cytochrome P450 family protein 31 503 - -
Lac4g2084 512 PANTHER CYTOCHROME P450 82C3-RELATED 22 500 IPR050651 -
Lac4g2084 512 SUPERFAMILY Cytochrome P450 41 500 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2084 512 CDD CYP81 72 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2324 Lac-Chr13:36850104 Lac4g2084 Lac-Chr4:40534507 2.50E-28 dispersed
Lac2g0365 Lac-Chr2:2742169 Lac4g2084 Lac-Chr4:40534507 1.80E-143 dispersed
Lac2g0888 Lac-Chr2:6995338 Lac4g2084 Lac-Chr4:40534507 7.20E-132 dispersed
Lac4g0020 Lac-Chr4:399057 Lac4g2084 Lac-Chr4:40534507 4.90E-61 dispersed
Lac4g2082 Lac-Chr4:40524930 Lac4g2084 Lac-Chr4:40534507 3.20E-164 dispersed
Lac4g2084 Lac-Chr4:40534507 Lac9g1247 Lac-Chr9:28876482 1.00E-149 dispersed
Lac4g2083 Lac-Chr4:40530483 Lac4g2084 Lac-Chr4:40534507 3.90E-48 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2084 K13260 - csv:101207828 821.617