Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2132 ATGGGTTGTTTTCCATGTTTCGATTCGAGGGAGGAGGAGAAGCTGAATCCTGAAAAGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCACCGAACATTGCCAAATTGCCTTCTGGAATAGACAAACTCAGATCAAAAAGTAATGGAGCCTCCAAAAGGGAACAGCAGAGTCCCAAAGATGCACCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGTGAGCTTGCAGTTGCAACGAAGAATTTTAGACCTGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGAAACGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTCAATCTGATTGGTTACTGTGCTGATGGGGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCGTTGGAAGACCATCTTCATGAAATTCCACCTGATAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTATTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCTTCCAATATATTACTTGAAGAAGGGTACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGTGATAAATCCCATGTTTCCACCAGGGTTATGGGAACTTATGGTTACTGTGCTCCCGAGTACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTTGGTGTCGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGAGAACAGAACCTTGTCACATGGGCACGACCGTTTTTTAACGACCGCAGAAGATTCTCGAAATTGGCTGATCCACAGTTGCAGGGTCGGTATCCCATGCGAGGTCTTTACCAGGCTCTAGCTGTGGCATCCATGTGTACCCAAGAACAAGCTGCAGCCCGTCCGCTCATTGGAGATGTGGTCACTGCCTTGTCTTATTTGGCAAATCAGTCCTATGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTCAGAGAGGTTCTGGTGATCGGGATGAAAGACGGAACAGAGACGAGAAAGGTGGAGGGGTAGTAAAGAATGAAGAAGGGGGTACATCCGGACGAAGGTGGGCATTGGACGGTCCCGAGAAGGACGACTCGCCGAGGGAGACTGCTAGGATTTTAAATAATAGGGATTTAGACAGAGAACGTGCAGTCGCTGAGGCCAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGTGCACAAGGCAGTTTTGATGGCTCTAATGGGTAA 1407 46.55 MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGASKREQQSPKDAPLVNISAQTFTFRELAVATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAQRGSGDRDERRNRDEKGGGVVKNEEGGTSGRRWALDGPEKDDSPRETARILNNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGSNG 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40926327 40931493 - Lag0002252.1 Lac4g2132 605664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2132 468 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Lac4g2132 468 FunFam Serine/threonine-protein kinase PBS1 58 161 - -
Lac4g2132 468 Gene3D Phosphorylase Kinase; domain 1 46 161 - -
Lac4g2132 468 FunFam Serine/threonine-protein kinase PBS1 162 377 - -
Lac4g2132 468 PANTHER OS07G0668900 PROTEIN 20 379 - -
Lac4g2132 468 MobiDBLite consensus disorder prediction 7 27 - -
Lac4g2132 468 CDD STKc_IRAK 91 359 - -
Lac4g2132 468 MobiDBLite consensus disorder prediction 1 63 - -
Lac4g2132 468 Pfam Protein kinase domain 90 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2132 468 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2132 468 Gene3D Transferase(Phosphotransferase) domain 1 162 375 - -
Lac4g2132 468 MobiDBLite consensus disorder prediction 413 434 - -
Lac4g2132 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2132 468 MobiDBLite consensus disorder prediction 382 400 - -
Lac4g2132 468 MobiDBLite consensus disorder prediction 366 434 - -
Lac4g2132 468 SUPERFAMILY Protein kinase-like (PK-like) 62 359 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1027 Lac-Chr3:8360370 Lac4g2132 Lac-Chr4:40926327 5.50E-89 dispersed
Lac4g2132 Lac-Chr4:40926327 Lac7g0849 Lac-Chr7:6877120 5.20E-185 dispersed
Lac4g2132 Lac-Chr4:40926327 Lac10g3058 Lac-Chr10:45061822 5.10E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86142 PF00069 Pkinase 4.50E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2132 K13430 - csv:101219880 899.427