Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2142 ATGGCAGAGCACAACAACAACAAGAAGCCATCACCAGCATCATCAACTCCAATAACTCCATCAACAGCCTCACCAGATATCAAAGACTTCAATATCATCATTTCAACTTCAAACAAAGATGAAAACAAGAAGCAACACCAACAATTGGCTCCTAAACGTACCTCTAACAAAGACCGTCACAAGAAAGTCGACGGCCGTGGCCGCCGGATCCGCATGCCTGCTCTCTGCGCCGCCCGTGTCTTCCAATTGACCCGCGAATTAGGCCACAAGACCGACGGGGAAACCATCCAGTGGCTGCTTCAGCAGGCGGAGCCGTCGATCATCGCCGCTACTGGCTCCGGTACCATCCCTGCCTCCGCCCTCCATGCTGCTGGCGTCTCCGTCTCCGACCACGACAGCTCCGTCTCCGCTGCCCTAACCCCCAAAATCGACGCGGTCGCCAGGCCGAATTGGGCGATGATGGGAGCCAATCTGAACAGATCTCACATGGCGACGGGCGGATTCTGGCCGTCGCTTGGCGGAATCGGGGCGGGGTTCGTGAGCGAGAATTCGGGTTCGATTATGCCGAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCGGTGAATTTCCCGACGATAATCGGGAATCAGCAGCAGCAAGTACCGGGGCTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATCTGAGAGGGATGTTGAATCCGCCATCGTATTCTCAAATTTATCACCAAATAGGGCAAAATCGGGACTCCTCGGCGCCATTGGAACAGGATCAAGCTCCTGATAAAGACGACTCTCAAGAATCGAGATGA 825 53.94 MAEHNNNKKPSPASSTPITPSTASPDIKDFNIIISTSNKDENKKQHQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSVSDHDSSVSAALTPKIDAVARPNWAMMGANLNRSHMATGGFWPSLGGIGAGFVSENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQQQQVPGLELGLSQEGNNLRGMLNPPSYSQIYHQIGQNRDSSAPLEQDQAPDKDDSQESR 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41057897 41058721 - Lag0002262.1 Lac4g2142 605674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2142 274 MobiDBLite consensus disorder prediction 1 69 - -
Lac4g2142 274 MobiDBLite consensus disorder prediction 248 274 - -
Lac4g2142 274 Pfam TCP family transcription factor 54 137 IPR017887 -
Lac4g2142 274 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 227 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac4g2142 274 MobiDBLite consensus disorder prediction 7 38 - -
Lac4g2142 274 MobiDBLite consensus disorder prediction 260 274 - -
Lac4g2142 274 ProSiteProfiles TCP domain profile. 56 110 IPR017887 -
Lac4g2142 274 MobiDBLite consensus disorder prediction 39 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0623 Lac-Chr3:4835985 Lac4g2142 Lac-Chr4:41057897 1.40E-29 dispersed
Lac4g2142 Lac-Chr4:41057897 Lac8g2023 Lac-Chr8:38700712 1.30E-26 dispersed
Lac4g2142 Lac-Chr4:41057897 Lac8g0084 Lac-Chr8:1165814 2.00E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23729 PF03634 TCP 7.30E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2142 - - - 0.0