Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2158 ATGTATTTGAGACTCAGGGGCACTGGTAATATGGGTGAAGGATCTATGGATGACATGAAAGGAATTACTAGAGTTACTTTGATTGAGTCATCGTCTACGAGATTAATGAAGAGGTCACGTACCCTTGGAAGTGGAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTACCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGGAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTACGGTAACCAAGGTCCTAGGTTCTTACCATTTGGTAATCAACTACTTTCTGCAAGCAATGATGTGAGCTCTTGGATTGGAACGATCAAACCCGAAAATAACGTCCCTCTTTGCAGCAGCAACTCACAGTTCGACTTCACGGACAGAAGAAAAACTATGTTGCCGGGGTCGTTGGCTTCTGATTACAAAGAAAAAGAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCTAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGATGGGAATGTTCAGAAAGTGCTCGGAAACATATCGAATCGTTTCTTCGACTCTACCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGGTCCAATCCAACCCCATCCCCCCAGCCCATTTCATCCATGGCGACGGTCTCGGCTTGGAGAGTGACCCTGTCAATTCTGGTTTGGTTTCGGACGGTAGCAGCGATGCAAACATCCGTTGCTACACGACATTCCAGGACGGACCTGATGGATCACCAGTAGATTTATTCAGGTTTTGA 987 46.4 MYLRLRGTGNMGEGSMDDMKGITRVTLIESSSTRLMKRSRTLGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSWIGTIKPENNVPLCSSNSQFDFTDRRKTMLPGSLASDYKEKELAISCIPIGLLPKSSDTQPFLNVGSSNDGNVQKVLGNISNRFFDSTCALSLLSTPVEPGEINLSSMVQSNPIPPAHFIHGDGLGLESDPVNSGLVSDGSSDANIRCYTTFQDGPDGSPVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41238440 41240312 + Lag0002278.1 Lac4g2158 605690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2158 328 ProSiteProfiles Zinc finger SBP-type profile. 48 125 IPR004333 GO:0003677(InterPro)
Lac4g2158 328 Pfam SBP domain 51 124 IPR004333 GO:0003677(InterPro)
Lac4g2158 328 SUPERFAMILY SBT domain 49 130 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac4g2158 328 Gene3D - 42 112 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac4g2158 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 155 IPR044817 GO:0003677(InterPro)
Lac4g2158 328 FunFam Squamosa promoter-binding-like protein 14 42 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2158 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0067 Lac-Chr3:464972 Lac4g2158 Lac-Chr4:41238440 7.70E-46 dispersed
Lac3g0544 Lac-Chr3:4166980 Lac4g2158 Lac-Chr4:41238440 5.80E-34 dispersed
Lac4g2158 Lac-Chr4:41238440 Lac7g0073 Lac-Chr7:654285 2.40E-27 dispersed
Lac10g0594 Lac-Chr10:4560081 Lac4g2158 Lac-Chr4:41238440 5.90E-45 wgd
Lac4g2158 Lac-Chr4:41238440 Lac8g0092 Lac-Chr8:1279799 3.00E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50570 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50570 63.1 1.3e-37 154.8
Lac2g0018 . 1 1068 SBP-box Gene Family AT1G20980 50.2 8.3e-268 921.0
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50570 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50570 63.1 1.3e-37 154.8
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50670 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50670 63.1 1.3e-37 154.8
Lac2g0018 . 1 1068 SBP-box Gene Family AT1G20980 50.2 8.3e-268 921.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23730 PF03110 SBP 7.40E-29 No_clan Lac TF