Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g2158 | ATGTATTTGAGACTCAGGGGCACTGGTAATATGGGTGAAGGATCTATGGATGACATGAAAGGAATTACTAGAGTTACTTTGATTGAGTCATCGTCTACGAGATTAATGAAGAGGTCACGTACCCTTGGAAGTGGAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTACCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGGAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTACGGTAACCAAGGTCCTAGGTTCTTACCATTTGGTAATCAACTACTTTCTGCAAGCAATGATGTGAGCTCTTGGATTGGAACGATCAAACCCGAAAATAACGTCCCTCTTTGCAGCAGCAACTCACAGTTCGACTTCACGGACAGAAGAAAAACTATGTTGCCGGGGTCGTTGGCTTCTGATTACAAAGAAAAAGAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCTAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGATGGGAATGTTCAGAAAGTGCTCGGAAACATATCGAATCGTTTCTTCGACTCTACCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGGTCCAATCCAACCCCATCCCCCCAGCCCATTTCATCCATGGCGACGGTCTCGGCTTGGAGAGTGACCCTGTCAATTCTGGTTTGGTTTCGGACGGTAGCAGCGATGCAAACATCCGTTGCTACACGACATTCCAGGACGGACCTGATGGATCACCAGTAGATTTATTCAGGTTTTGA | 987 | 46.4 | MYLRLRGTGNMGEGSMDDMKGITRVTLIESSSTRLMKRSRTLGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSWIGTIKPENNVPLCSSNSQFDFTDRRKTMLPGSLASDYKEKELAISCIPIGLLPKSSDTQPFLNVGSSNDGNVQKVLGNISNRFFDSTCALSLLSTPVEPGEINLSSMVQSNPIPPAHFIHGDGLGLESDPVNSGLVSDGSSDANIRCYTTFQDGPDGSPVDLFRF | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 41238440 | 41240312 | + | Lag0002278.1 | Lac4g2158 | 605690 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g2158 | 328 | ProSiteProfiles | Zinc finger SBP-type profile. | 48 | 125 | IPR004333 | GO:0003677(InterPro) | |
| Lac4g2158 | 328 | Pfam | SBP domain | 51 | 124 | IPR004333 | GO:0003677(InterPro) | |
| Lac4g2158 | 328 | SUPERFAMILY | SBT domain | 49 | 130 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Lac4g2158 | 328 | Gene3D | - | 42 | 112 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Lac4g2158 | 328 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 31 | 155 | IPR044817 | GO:0003677(InterPro) | |
| Lac4g2158 | 328 | FunFam | Squamosa promoter-binding-like protein 14 | 42 | 112 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0067 | Lac-Chr3:464972 | Lac4g2158 | Lac-Chr4:41238440 | 7.70E-46 | dispersed | |
| Lac3g0544 | Lac-Chr3:4166980 | Lac4g2158 | Lac-Chr4:41238440 | 5.80E-34 | dispersed | |
| Lac4g2158 | Lac-Chr4:41238440 | Lac7g0073 | Lac-Chr7:654285 | 2.40E-27 | dispersed | |
| Lac10g0594 | Lac-Chr10:4560081 | Lac4g2158 | Lac-Chr4:41238440 | 5.90E-45 | wgd | |
| Lac4g2158 | Lac-Chr4:41238440 | Lac8g0092 | Lac-Chr8:1279799 | 3.00E-38 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23730 | PF03110 | SBP | 7.40E-29 | No_clan | Lac | TF |
Pathway information