Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2184 ATGTCCGTAATTGAGAATGATCCGTTTGGTTACCAAGAAAATTTCTTGAATCCCCATCTCTCATTTGACTTCAATTACTTGGAAGAGATGCTGCTGGCTGATATGCTTTTCACCGCCGTTGGAAGGACGTCCTCGTCGTCGGATTCGAGCTCTTGCTCGTCTCCGATAGTGCAAGTTAAGGAGGAGTTGGAAGAAGGGAGTGTGAGCGACGTCGTGGTCGTGCAGGATGATCAGCCACAGCAGGAGGAGAGGGCGTATAGAGGGGTACGGCGACGGCCGTGGGGGAAGTATGCGGCCGAGATTAGGGACTCGACGCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGAGAGTGCGGAGGCCGCGGCGTTGGCCTATGACCAAGCCGCATTTTGCATGAGAGGGGCATTGGCCACACTCAATTTTCCGGTGGAGGTCGTCCGGGAGTCGCTCCGAGAGATGAAGTACCGGTGGGAGGCCGGGTGCTCGCCGGTCTTGGCGCTCAAGCGCCGCCACTCGATACGGAGGAAGAAGATGGCGGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAGTTGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTGGAAGAACTCTTGAGCTTGACTTCTTAA 642 54.21 MSVIENDPFGYQENFLNPHLSFDFNYLEEMLLADMLFTAVGRTSSSSDSSSCSSPIVQVKEELEEGSVSDVVVVQDDQPQQEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFESAEAAALAYDQAAFCMRGALATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKVVVFEDLGVEYLEELLSLTS 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41482719 41483360 - Lag0002304.1 Lac4g2184 605716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2184 213 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2184 213 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2184 213 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Lac4g2184 213 Gene3D AP2/ERF domain 85 146 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2184 213 CDD AP2 86 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2184 213 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677(InterPro)
Lac4g2184 213 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2184 213 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2184 213 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2184 213 PANTHER DNA-BINDING DOMAIN 54 179 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2185 Lac-Chr12:38963186 Lac4g2184 Lac-Chr4:41482719 1.70E-35 dispersed
Lac4g2184 Lac-Chr4:41482719 Lac7g0597 Lac-Chr7:4768871 7.20E-41 dispersed
Lac4g2184 Lac-Chr4:41482719 Lac4g2188 Lac-Chr4:41536424 5.90E-19 proximal
Lac11g2619 Lac-Chr11:42197822 Lac4g2184 Lac-Chr4:41482719 4.30E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23735 PF00847 AP2 5.80E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2184 K14516 - csv:101205053 249.21