Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2208 ATGGACGAGGTTGAAGAAGCTAATCGAGATGCTGTTGAGAGCTGCCACAGAGTTTTGAATCTGTTGACTGTGGCGTCGCCTCAAGATAACTCGAAGCTCAGGAGTTGTTTGATGGCGGAAACTGGACAGGCTGTGTTTAAGTTTAGGAAGGTTTTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAGAAGAAGGTCAAGAGCTTTCAGTTTAATTCCTCTTCCCCTTTTCCTCTTCCCCACTCCATGTTTTTAGAAACTTTTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGGAGGAATTTGCAGATGGGTCCTCTTTCTTTGGGGAGCCCATCTTTGGAATTGAGCTCAAATGGCAAAAGTTGTTCAATCCAACAACAACAACAACAACAACCACCTCAATCTGTTGGTCATTATCATCATCACTTCCTTCAGAACAGGGTGTTGTTGAATAGTAATCCTAATGTTAATCCTAATGCTTCACAGCCTGAAATGGTGTATCTTAGGAGCAATAGTGGCATTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCTTTCATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGCCTTTCATTTGATCGGGGCGCCCCGGTCTTCCGATCAGAATTCGCACCATAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGCGTTAAATGTGGAAGTACTGGGAGATGTCACTGCTCTAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCTGCAATTAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAATATGGCCAGAAGCCAATCAAGGGTTCTCCTCACCCAAGGGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCGAGAAAGCATGTCGAGAGGTGTCTCGAGGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCCAGAATACCTTCTCAATCTGCAAATACTTGA 1047 44.99 MDEVEEANRDAVESCHRVLNLLTVASPQDNSKLRSCLMAETGQAVFKFRKVLCLLDSSGLGHARVRKKKVKSFQFNSSSPFPLPHSMFLETFSPNCRMDLLQGRNLQMGPLSLGSPSLELSSNGKSCSIQQQQQQQPPQSVGHYHHHFLQNRVLLNSNPNVNPNASQPEMVYLRSNSGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSAFHLIGAPRSSDQNSHHKRKCSGRGEDGSVKCGSTGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQSANT 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41754574 41756366 + Lag0002328.1 Lac4g2208 605740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2208 348 Gene3D WRKY domain 265 341 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g2208 348 Pfam WRKY DNA -binding domain 282 339 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g2208 348 Pfam Plant zinc cluster domain 233 278 IPR018872 -
Lac4g2208 348 SUPERFAMILY WRKY DNA-binding domain 278 340 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g2208 348 FunFam WRKY transcription factor 65 264 341 - -
Lac4g2208 348 ProSiteProfiles WRKY domain profile. 275 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g2208 348 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 344 IPR044810 GO:0003700(InterPro)
Lac4g2208 348 SMART WRKY_cls 280 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2208 Lac-Chr4:41754574 Lac9g1320 Lac-Chr9:30464887 8.70E-44 dispersed
Lac11g2645 Lac-Chr11:42453274 Lac4g2208 Lac-Chr4:41754574 1.80E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23738 PF03106 WRKY 3.50E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2208 - - - 0.0