Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2224 ATGGCGAACAATCATTCCGAGACTCCAGCCGATGATTTCCTCGAGCAGATTCTTGGGATGTCCCCTTTTGGTTCGGCGGAGCAAGGGTTAGCTGGAACTGACGGCGGCTTGCCCGGAGCTGCTGCTGCGGCGGCTCAGGTTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGCGGTGCCCACATAGCTACGATTGGAAGTGGGAGTGTCGGTGGAGCAGCGTTCCATGGCGGACCTCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGCAAGCGGTATTGTGGCGAGGTTGTTGATGTTCGAGCTTCTTCTGTTAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAACCCCGCATCCACCAGCAATGCGACCTAGGGTACGGGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCCGAGCGGTTACGAAGAGAAAGGATTGCCGAGAGAATCAGGGCTTTGCAGGAGCTCGTTCCAAGTGTCAATAAGACGGACAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCCGGTGCTGTGGCACCACTTGTAACGGACATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAATCAACCTGCATGGGAGAAGTGGTCGAACGACGGTACGGAGAGACAAGTTGCAAAACTTATGGAAGAAAACGTGGGGGCTGCAATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCCTTGGCTTCAGCGATTTATCACACACAACCGCCTGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCATCATAG 930 52.47 MANNHSETPADDFLEQILGMSPFGSAEQGLAGTDGGLPGAAAAAAQVQAPMMLQLSSGDGGAHIATIGSGSVGGAAFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVFQGQQMHATMGATPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 41900211 41903265 - Lag0002344.1 Lac4g2224 605756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2224 309 FunFam Basic helix-loop-helix transcription factor 148 210 - -
Lac4g2224 309 Gene3D - 148 210 IPR036638 GO:0046983(InterPro)
Lac4g2224 309 SMART finulus 159 208 IPR011598 GO:0046983(InterPro)
Lac4g2224 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983(InterPro)
Lac4g2224 309 MobiDBLite consensus disorder prediction 133 157 - -
Lac4g2224 309 Pfam Helix-loop-helix DNA-binding domain 158 203 IPR011598 GO:0046983(InterPro)
Lac4g2224 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 212 IPR036638 GO:0046983(InterPro)
Lac4g2224 309 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 288 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac4g2224 309 MobiDBLite consensus disorder prediction 233 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0200 Lac-Chr3:1412872 Lac4g2224 Lac-Chr4:41900211 2.80E-49 dispersed
Lac4g2224 Lac-Chr4:41900211 Lac6g2849 Lac-Chr6:46113787 3.80E-43 dispersed
Lac3g2086 Lac-Chr3:25480451 Lac4g2224 Lac-Chr4:41900211 5.20E-75 transposed
Lac13g0418 Lac-Chr13:2925494 Lac4g2224 Lac-Chr4:41900211 8.00E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23741 PF00010 HLH 1.20E-07 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2224 - - - 0.0