Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2236 ATGTTTGCTGCAACTATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGCGTCTCTTCTGGCACAAGAGTCCAGCCTGATTTCAGCTGCTTAAACCCTCTCCTTCCAACATTTTCTGATATTCACCACCCACCACAAAAGGTCAAGAAGAAACGGAGCCTCCCGGGCAACCCAGACCCAGATGCGGAAGTGATAGCACTGTCGCCGAAAACGCTTCTGGCAACGAATAGATTCGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAGAACTTGCAGCTGCACAGAAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCATATGTCTGCCCAGAGCCCACATGTGTTCATCATCATCCTTCAAGAGCATTGGGAGATCTCACAGGAATCAAAAAACATTACTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGACAAATGTTCTAAAGTCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCATTGGCTGAAGAAAGTGCTAGGCTCTCAGCTAACCAATTGGCCATGGCGGCCGCTGCCGCTGCCTCGGGCGCCACCGCCACCAATATAAACCCGTCCTCTGCCACCGCCGCCCAATCTCTCTTCCCTTTTGGTACCCACCACCAGTTTCCAAACTCGTCGCTACCACCACCACTGCCACCACCGCCGCAAACCCACATGTCCCTAAACCCTTGGGAGCATCCACAAAACCCTAACCCTAATCATTCCCTCCAAATCATCAAGCCAGAAGACTCACATTCTCATTCTCATTCTCATCATTTTCACCAAATTCCAACTTTGCCCCTATCCAATTCCTCCTCAAACAACAATAACCACCACCCTTTTGGTCTAATTCAAGACCACCACCACCACCACAAGGCTGGCTCTTCCTCCTCTTCTTCCATGATAACCTCACCATTCAGGAACCTCCACGTGTCGGTGCAACCGGCCTCGAATGCTGCCACGTCAGCTCACCTATCAGCCACAGCCCTACTCCAAAAGGCTGCAACAGTTGGCGTTGGAGCTGCAAAATCCGGTCACCACCAGCCCGAGTCAGTGGGTCACATGACTCACTTCAACATGCCCGGCATCGCCGAGTTCGGCGCACCGAGTCACATTGACTCACTGACTCAACTCGGACCCGACTACGCCACGTGGCAGAAGAGTGACAGGCTGACAAGGGACTTTCTCGGTCTGACCGGAGATGGGAACGGCGGCGGGCGTGGCGGTGGTTCCGGCGACGGCGGCAGTGGAGTGGTGCAGGTTAGCATGAGCGTTAAGGACATGCTAACGTACGCAGGGGGATTGGATATGTTTAAGCCTCATAACAATAATGGTTTTGGATATGCGGAGCCAACTGCCAATGAAACTTGGGACTGCTGA 1512 50.33 MFAATMSNSTSLSEEASVSSGTRVQPDFSCLNPLLPTFSDIHHPPQKVKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAASGATATNINPSSATAAQSLFPFGTHHQFPNSSLPPPLPPPPQTHMSLNPWEHPQNPNPNHSLQIIKPEDSHSHSHSHHFHQIPTLPLSNSSSNNNNHHPFGLIQDHHHHHKAGSSSSSSMITSPFRNLHVSVQPASNAATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMPGIAEFGAPSHIDSLTQLGPDYATWQKSDRLTRDFLGLTGDGNGGGRGGGSGDGGSGVVQVSMSVKDMLTYAGGLDMFKPHNNNGFGYAEPTANETWDC 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42057027 42060096 - Lag0002356.1 Lac4g2236 605768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2236 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Lac4g2236 503 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
Lac4g2236 503 FunFam protein indeterminate-domain 12-like 57 125 - -
Lac4g2236 503 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lac4g2236 503 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Lac4g2236 503 Gene3D Classic Zinc Finger 147 212 - -
Lac4g2236 503 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Lac4g2236 503 MobiDBLite consensus disorder prediction 272 290 - -
Lac4g2236 503 MobiDBLite consensus disorder prediction 304 325 - -
Lac4g2236 503 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Lac4g2236 503 MobiDBLite consensus disorder prediction 256 271 - -
Lac4g2236 503 MobiDBLite consensus disorder prediction 41 62 - -
Lac4g2236 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 445 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac4g2236 503 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Lac4g2236 503 SMART c2h2final6 154 174 IPR013087 -
Lac4g2236 503 SMART c2h2final6 78 100 IPR013087 -
Lac4g2236 503 SMART c2h2final6 119 149 IPR013087 -
Lac4g2236 503 MobiDBLite consensus disorder prediction 248 346 - -
Lac4g2236 503 Gene3D Classic Zinc Finger 57 126 - -
Lac4g2236 503 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1911 Lac-Chr13:24627739 Lac4g2236 Lac-Chr4:42057027 4.90E-47 dispersed
Lac2g0460 Lac-Chr2:3376502 Lac4g2236 Lac-Chr4:42057027 1.40E-87 dispersed
Lac4g2236 Lac-Chr4:42057027 Lac4g2989 Lac-Chr4:48131014 3.50E-86 dispersed
Lac4g2236 Lac-Chr4:42057027 Lac9g2004 Lac-Chr9:39675566 1.30E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23743 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2236 K25870 - csv:101208253 739.954