Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2246 ATGGGCAACGCCGACTACGTGTACCCATCGGGCGGGGGCGGGGAGTGCTTGCACAGGGCGGCGATTCCGCCGGCGCAGCCGTTCGTGAAGTCGCTGAAGAACTCTCTGAAGGAGACGTTCTTCCCGGACGACCCGCTCCGGCAGTTCAAGAACCAGCCGGCGGCGAGGAAAGTGCGTCTGGGACTGCAGTACTTGTTTCCGGTGCTGGAATGGGGGCCACGTTATACTCTTGGGCTTCTGAAATCGGATCTCATCTCCGGTATCACCATTGCCAGCCTCGCCATTCCTCAGGGGATCAGCTACGCCAAGCTCGCTAACTTGCCCCCAATCCTTGGCCTCTATTCGAGTTTTATTCCGCCGCTGATTTATGCTATGATGGGAAGCTCGAAGGACTTGGCCGTCGGAACGGTGGCGGTGGCGTCGCTTCTGATCAGCGCAATGTTAGGGGCGGAGGTTAACGCCGCCCACAATCCCACTCTTTATCTCCACCTTGCTTTCACCGCCACCTTCTTCGCCGGAGTCTTCCAAGCCTCCTTGGGCCTCCTCAGGCTAGGGTTCATCGTGGATTTTTTGTCACATGCAACCATAGTTGGGTTCATGGCTGGTGCTGCCACCGTGGTGTGCCTACAACAACTCAAAGGCATCCTTGGCCTAACCCATTTCACACACGCGACCGACCTCGTCTCCGTACTCCGCTCGGTTTTCACCCAAGTCCACGAGTGGAGATGGGAAAGCGGAGTTTTGGGATGTTGTTTTCTCTTTTTCCTTCTGGTCGCCAGATATTTTAGCAAGAAAAAGCCAAAGTTCTTTTGGATATCAGCAATGGCACCTTTGACATCAGTAATTCTAGGAAGCCTTCTAGTGTTCCTCACTCATGCAGAAAAACACGGTGTCGAAGTGATTGGTGAGTTGAAGAAAGGACTAAATCCATTGTCCATAACGGATTTAGTGTTCGTGTCCCCTTATCTTTCCATTGCTATTAAAACCGGCATCATCACTGGCATCATTGCTCTTGCGGAAGGAATAGCAGTAGGAAGAAGCTTTGCAATGTTCAAGCATTACAACATCGATGGCAACAAGGAAATGGTAGCCATTGGCACCATGAACATGGTCGGCTCTTGCTTCTCTTGCTATCTCACTACAGGCCCATTTTCGCGATCGGCTGTGAACTACAATGCAGGTTGCAAAACGGCGGTTTCGAACGTGGTAATGGCGATTGCAGTGATGTTGACGCTGCTGTTCTTGACTCCCCTGTTCCACTACACTCCTCTCGTGGTGCTTTCTTCCATCATCATTTCGGCCATGCTTGGCCTCATCGATTACGAGGCCGCCATTCACTTGTGGAAGGTCGATAAGTTCGATTTCCTTGTCTGTATTGGCGCTTATGCTGGTGTCGTCTTTGCCAGTGTTGAAATTGGCTTGGTCATTGCGGTGGCAATATCTCTGCTTAGACTACTTTTGTTCGTCGCAAGGCCGAGGACACTTGTGCTTGGAAACCTTCCCAATTCCACTGTTTACAGGAACGTCGAGCAATACCCGAATGCCAATAATGTTCCCGGACTTCTCATACTTGAGATTGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTAAGAGAAAGGATTATAAGGTGGGTAGATGAAGAGGAAGACAGGATAAAGGCTTCAGGAGAAAGTACCTTACAATATGTCGTATTGGACATGAGTGCTGTTGGAAACATTGATACGAGTGGAATAAGCATGTTTGAAGAGATCAAGAAGATTTTAGACAGAAGGGGATTGAAGATAGTTTTGGCCAACCCTGGTGCTGAGGTGATGAAGAAGCTGGACAAAGGCAAGTTCATCGAGAGCCTCGGACACGAATGGATCTATCTTACGGTGGCTGAAGCTGTAGCAGCTTGCAACTATATGCTTCACTCCTGCAAACCTGTGACTGATGAGAAAGCAGAGCCATGGAACAATGTCTAA 1968 49.95 MGNADYVYPSGGGGECLHRAAIPPAQPFVKSLKNSLKETFFPDDPLRQFKNQPAARKVRLGLQYLFPVLEWGPRYTLGLLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLISAMLGAEVNAAHNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMAGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFTQVHEWRWESGVLGCCFLFFLLVARYFSKKKPKFFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPLSITDLVFVSPYLSIAIKTGIITGIIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYEAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIAVAISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNANNVPGLLILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVVLDMSAVGNIDTSGISMFEEIKKILDRRGLKIVLANPGAEVMKKLDKGKFIESLGHEWIYLTVAEAVAACNYMLHSCKPVTDEKAEPWNNV 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42165358 42173944 + Lag0002366.1 Lac4g2246 605778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2246 655 SUPERFAMILY SpoIIaa-like 516 635 IPR036513 -
Lac4g2246 655 CDD STAS_SulP_like_sulfate_transporter 512 627 - -
Lac4g2246 655 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lac4g2246 655 Gene3D STAS domain 491 637 IPR036513 -
Lac4g2246 655 PANTHER SULFATE TRANSPORTER 35 635 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2246 655 FunFam Sulfate transporter 31 491 637 - -
Lac4g2246 655 ProSiteProfiles STAS domain profile. 511 634 IPR002645 -
Lac4g2246 655 Pfam Sulfate permease family 80 460 IPR011547 GO:0016020(InterPro)
Lac4g2246 655 Pfam STAS domain 512 630 IPR002645 -
Lac4g2246 655 NCBIfam sulfate permease 67 630 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1631 Lac-Chr13:17611207 Lac4g2246 Lac-Chr4:42165358 4.70E-208 dispersed
Lac2g0871 Lac-Chr2:6864122 Lac4g2246 Lac-Chr4:42165358 2.20E-205 dispersed
Lac4g2246 Lac-Chr4:42165358 Lac4g2856 Lac-Chr4:47177265 8.20E-213 dispersed
Lac4g2246 Lac-Chr4:42165358 Lac7g0709 Lac-Chr7:5711075 4.00E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2246 K17471 - csv:101222260 1196.42