Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2252 ATGGATTTAATAAATGGGGGCGAGACCGGCGACACTCCGGTCGCCAAGAACTCTGGTAATCAAGTAGCGGATATTGTTTCTGGTAAGTCTAGTGATCCCCTAGAGAAGGATTTGGGTTCAAAGTTGGAGACAGGAAGCAAAAGCAGCAAGGATATGGTTTTTCGTGCTGATAAGATTGATTTCAAGAGCTGGGATATTCAGCTGGACAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCGGCCAAAAAGGAAGAGTGGGAGATTGACTTGTCTAAGCTTGATATTAGATATGTTAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAACTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGATGGCGTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAGCTTCTTTTCGCCAGGAAGTTGCTGTTTGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTTTGGAGCATCAATGGGGACGTCCAACCTTAAAATCCCTCTCCAAAGCTCATCAAGTGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTACCTTCCAGGTGGCACACTAAAGAGCTTTTTAATCAGAAATAGGAAAAAGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTAGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACAGAGAATGTGCTACTAGATGCTCAGAGGACTCTGAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCACAGAATCCAAGGGACATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCCGAGGTCCTTGATGGTAAGCCTTATAATCGGAAATGCGACGTCTACAGTTTTGGTATATGTTTATGGGAAACATATTGCTGTGACATGCCGTACCCAGATCTCAGTTTTGCTGAAGTGTCGTCAGCAGTCGTGCGACAGAATTTACGACCAGAAATTCCGAGATGCTGCCCGAGTTCCTTGGCAAATATCATGAGAAGATGTTGGGATGCAAATCCAGAAAGGCGACCCGACATGGACGAGGTCGTAAACTTGTTGGAAGCCATCGATACGAGCAAGGGAGGTGGCATGATACCTGAAGACCAAGCATCCGGTTGTTTCTGTTTCGGCGTGCCTCGTGGTCCATAG 1212 45.3 MDLINGGETGDTPVAKNSGNQVADIVSGKSSDPLEKDLGSKLETGSKSSKDMVFRADKIDFKSWDIQLDKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGNYDGNDVAVKVLDWGEDGVSSVAEIAALRASFRQEVAVWHKLDHPNVAKFFGASMGTSNLKIPLQSSSSDSNQSFPSRACCVVVEYLPGGTLKSFLIRNRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQRTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPEIPRCCPSSLANIMRRCWDANPERRPDMDEVVNLLEAIDTSKGGGMIPEDQASGCFCFGVPRGP 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42223989 42226961 + Lag0002372.1 Lac4g2252 605784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2252 403 CDD STKc_MAP3K-like 103 374 - -
Lac4g2252 403 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2252 403 MobiDBLite consensus disorder prediction 30 45 - -
Lac4g2252 403 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 56 375 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Lac4g2252 403 SMART serkin_6 96 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2252 403 FunFam Serine/threonine-protein kinase HT1 200 385 - -
Lac4g2252 403 Gene3D Transferase(Phosphotransferase) domain 1 200 387 - -
Lac4g2252 403 SUPERFAMILY Protein kinase-like (PK-like) 78 374 IPR011009 -
Lac4g2252 403 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Lac4g2252 403 MobiDBLite consensus disorder prediction 1 45 - -
Lac4g2252 403 Pfam Protein tyrosine and serine/threonine kinase 104 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2252 403 MobiDBLite consensus disorder prediction 11 27 - -
Lac4g2252 403 FunFam Kinase suppressor of Ras 1 85 179 - -
Lac4g2252 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2252 403 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2252 403 PRINTS Tyrosine kinase catalytic domain signature 197 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2252 403 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2252 403 PRINTS Tyrosine kinase catalytic domain signature 235 253 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0697 Lac-Chr3:5403620 Lac4g2252 Lac-Chr4:42223989 1.40E-148 dispersed
Lac4g2252 Lac-Chr4:42223989 Lac8g0305 Lac-Chr8:3607110 4.70E-150 dispersed
Lac4g2252 Lac-Chr4:42223989 Lac7g0715 Lac-Chr7:5779257 1.90E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86144 PF07714 PK_Tyr_Ser-Thr 2.90E-57 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2252 - - - 0.0