Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2329 ATGTCCATTTCTCCCCTCCCCTTTCTTCTTCTTCTTGCCATAGCCTCCCTCTCCGCCGCCGCCGCCGCGGCCGAATGCCCTCTCAACTTCACCGTCCTCCGCCAATTCTCCCAGGGCTCCGCCGTCTCCCGCCCCGATTTCTCCGACGAATGTCAATACATCCGCCTCGGCCTCCGCCTCGTCCTCGCGCAGTACCTCAAACTCACCGGCTCGTTCTTGCCGCCGGTGAACTCTACCGATTCGTGCTGGGATTCTTACCAGTCGGTCGTTAATGGGACTTGGCCGAATTTCAACATTCGGACCTCTTGCGGGTTTCAAACCGGGTGGATCTCCCAGGGATGTATGAACATCACTACCAAAGCTGAATTCGAGAGAATCGTTCCTAAATCGGCGCTCGATGGCGTTGTTGCGAACTGTAACCAATCGCTTGGAAATGGCTCCCCCTGTGCCTCTTGCACGACGAGGCTCTCGATCGTTCAGGCCTCGTTCTTGACCGGTCCGTCCATCGGCAATGTCACCGATTGCCAAGCATATCCGTCGATCTACGCGGCGGCGTTTGCAAATCAGTTCGGACCGACCGACCGGGGAACTGCCCAATGCTTGTTCTCGCTCAATCCTCTGTCGTCGGGGGATTCGAGAAGCAAGAAGCGGAATACGGTGGTTTTGGTGGTTCTGATTTGTTGTGGCGTTGCATTGACCGCGGCGGCGGCGGCTGCCGGCGGGTGGTTTTTCTGGCGAAAACAGGGGAAATTGAAGAAGAACGATAGAATTCGTAGAGTTGAAACGGGTTTGGGTTCTGGATTGGAGTCGATAAGCGCAAGCACTACGCTGGTGAAGTTCACATTCGATGAAATCAAGAGGGCTACAAGGAATTTCTCTAGAGATTACATAATTGGGAGAGGGGGTTATGGAAATGTGTATAAAGGGATGCTATCTGATGATTCTGAAGTTGCATTGAAGCGGTTTAAGAACTGTTCTGCAGCCGGGGACGCCATTTTTGCTCATGAAGTTGAGGTAATTTCTAGTGTTAGGCATGTTAATCTTGTTGCTTTGAGAGGTTATTGCATTGCAACTACTCCATTAGAGGGTCATCAGAGGATAATTGTGTGTGATTTGATGAAGAATGGGAGTCTTTATGACCATTTGTTTGGTTATTCTGATGAGAGATTGAGTTGGCCAATTAGGCAGAAGATTGCTCTTGGCACAGCTAGGGGATTGGCTTATCTCCATTATGGAGCTCAGCCTGCCATTATCCATAGAGATATCAAAGCTAGCAACATTCTTTTGGATGAAAATTTTGACCCCAAGGTGGCTGACTTTGGTTTGGCTAAGTTCACACCAGAAGGAATGACTCATTTGAGCACAAGAGTTGCTGGAACTATGGGGTATGTGGCCCCCGAGTACGCGTTGTATGGTCAGTTGACGGAGAGGAGTGACGTGTATAGCTTTGGAGTTGTTCTACTCGAGCTTTTGAGCGGGAGGAAGGCGCTCGGGGTGAGGAGCAATGATAGTCAGCCATTTCTAGTGACTGATTGGGCTTGGTCTTTGGTGAGGGAACAAAAGGCAATGGATGTTGTTGAAGAAGGCATGCCAGAGCTGGGTTCCCCTGAGGTTGTTGAGAAGTATGTTTTGATTGCTGTTCTTTGTTCCCATCCCCAGCTCTATGCTAGGCCATCAATGGATCAAGTTGTGAAAATGTTGGAAACTGATCTCTCTGTTCCTTCAATCCCTGAGAGGCCCATCCCTCTGGTTGCTGAGATTGATGAAATTGAGAGATCTATGAGTAGTAGTAGCTCTGCTCAGCAATCTGGTTCAGTTGGCTTTCATAGTTACACATTACCAAATGACCACATGTAG 1857 49.7 MSISPLPFLLLLAIASLSAAAAAAECPLNFTVLRQFSQGSAVSRPDFSDECQYIRLGLRLVLAQYLKLTGSFLPPVNSTDSCWDSYQSVVNGTWPNFNIRTSCGFQTGWISQGCMNITTKAEFERIVPKSALDGVVANCNQSLGNGSPCASCTTRLSIVQASFLTGPSIGNVTDCQAYPSIYAAAFANQFGPTDRGTAQCLFSLNPLSSGDSRSKKRNTVVLVVLICCGVALTAAAAAAGGWFFWRKQGKLKKNDRIRRVETGLGSGLESISASTTLVKFTFDEIKRATRNFSRDYIIGRGGYGNVYKGMLSDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCIATTPLEGHQRIIVCDLMKNGSLYDHLFGYSDERLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDENFDPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSNDSQPFLVTDWAWSLVREQKAMDVVEEGMPELGSPEVVEKYVLIAVLCSHPQLYARPSMDQVVKMLETDLSVPSIPERPIPLVAEIDEIERSMSSSSSAQQSGSVGFHSYTLPNDHM 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42999112 43000968 - Lag0002449.1 Lac4g2329 605861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2329 618 ProSiteProfiles Protein kinase domain profile. 292 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2329 618 PANTHER OS01G0750732 PROTEIN 49 600 IPR050885 -
Lac4g2329 618 SMART serkin_6 292 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2329 618 Pfam SPARK 22 175 IPR043891 -
Lac4g2329 618 Gene3D Transferase(Phosphotransferase) domain 1 373 581 - -
Lac4g2329 618 Pfam Protein kinase domain 295 511 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2329 618 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524(InterPro)
Lac4g2329 618 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 373 575 - -
Lac4g2329 618 SUPERFAMILY Protein kinase-like (PK-like) 269 568 IPR011009 -
Lac4g2329 618 Gene3D Phosphorylase Kinase; domain 1 259 371 - -
Lac4g2329 618 MobiDBLite consensus disorder prediction 592 610 - -
Lac4g2329 618 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 253 371 - -
Lac4g2329 618 MobiDBLite consensus disorder prediction 592 618 - -
Lac4g2329 618 CDD STKc_IRAK 298 568 - -
Lac4g2329 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2329 Lac-Chr4:42999112 Lac5g2500 Lac-Chr5:43542531 4.70E-93 dispersed
Lac7g0047 Lac-Chr7:446861 Lac4g2329 Lac-Chr4:42999112 3.20E-40 dispersed
Lac4g2329 Lac-Chr4:42999112 Lac12g0877 Lac-Chr12:9089906 6.40E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86145 PF00069 Pkinase 3.00E-40 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2329 - - - 0.0