Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g2362 | ATGGATTCAAGTCCATTCGCTTTTCTGTCACAATTGGGGCTGAAAGCAGACTCGGAAGCGGCGCACTTCACATTTTTTGCGTTGCTTCTCTTTGTTTGTTATATAATTGTTCGTCTTTTTGAGAAGCGACGTTGGCTGAATGAATCAGTTACTTCCCTAGCTATTGGAATTCTCACCGGAATTTTCGTTCTCCTAACTACCGGAGGAAAAAGTTCTCACATCTTAGTATTCAGTGAACAGCTTTTCTTCATTTACCTGCTTCCACCCATAATATTTAATGCCGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGCAACTTTCTGGCAATCATGTTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCACTAGGTTCCCTCAACTTATTCAAGAAACTGGATGTTGGCTTATTAGACACGCAGGATTATTTTGCACTTGGGGCAATCTTAACCGCGACAGATAGTGTTTGCACGTTGCAAGTTCTTAAACAAGATGAGACACCCTTACTTTATAGTCTGGTCTTTGGCGAAGGTGTGGTCAATGATGCTACCTCAGTGGTACTCTTTAATGCAATCAAGAAATTTGACCTCGCTCACATCACTTCTGCAAATGCCATTCAATTAGCCGGAAGTTTCTTAAGTTTGTTCTTGGAAAGCACATTGCTGGGAATAGCAGTTGGGCTGCTATGTGCATTTATCATAAAGAAGCTATCCTTAGGCAGGTATCCTACAGATTATGAAGTTGTTCCGATGATTTTGATGGCCTACCTTTCATATATGATTGCTGAACTGTTGCTTCTTAGCGGTATTCTTAGTGTGTTCTTTTGTGGGATTGCCATGTCTCACTACACATCTTGGCATAATGATAGTGGAAGTTCCAGTCGGACACCTCGACAGATACCTCGCCATGCTTTTGCAACATTATCTTTCGTTGCAGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCTTTGGATATTGAGAAGTGGAGTGTTGTTAGAGAAAGCCCTGGGACATCAGTTGGAGCAAGTCTTATACTGCTAGGTCTTGTTCTTGTTGGAAGAGCAGCTTTTGTATTCCCACTTTCTCTCATATCCAACTTGATAAGAAAGCATCAAAAATACCATATTGGGTTTAAACAGCAGTTTACAATTTGGTGGGCTGGGCTTATGAGAGGAGCTGTATCAGTGGCACTTGCTTATCATCAGTTTGCAAAGTCAGGGAAAAATGAACGAGGGCCTTCGATGATGATAACTAGCACCATTACCATTGTTCTCTTCACTAATGTGGTTTGTGGATTGTTCACCAAGTCTATAGTAAGACGCATGATTCCTCAAACTAACAACTCAGAACATTTATATTTTCCCACGCTTGAAGAATTGAATGAACCATTACTTGTTGACAATAATCTTGAATCTGACGAGGATGAAATAAACCAACTTCGTCCAAATAGTTTCATGTCGCTGTTGATGACATCTCCAACTCAATGTTTTCATTACTATTGGCGGAAATTTGATGATTGTTTTATGCATCCTATTTTTGGAGGAAGCGAATCATCATTGGAGCATCTCGAATCATCATTGGAACATCTCAGTCCCTAA | 1611 | 40.16 | MDSSPFAFLSQLGLKADSEAAHFTFFALLLFVCYIIVRLFEKRRWLNESVTSLAIGILTGIFVLLTTGGKSSHILVFSEQLFFIYLLPPIIFNAGFQVKKKQFFRNFLAIMLFGAFGSVISFFIISLGSLNLFKKLDVGLLDTQDYFALGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLAHITSANAIQLAGSFLSLFLESTLLGIAVGLLCAFIIKKLSLGRYPTDYEVVPMILMAYLSYMIAELLLLSGILSVFFCGIAMSHYTSWHNDSGSSSRTPRQIPRHAFATLSFVAEIFIFLYVGMDALDIEKWSVVRESPGTSVGASLILLGLVLVGRAAFVFPLSLISNLIRKHQKYHIGFKQQFTIWWAGLMRGAVSVALAYHQFAKSGKNERGPSMMITSTITIVLFTNVVCGLFTKSIVRRMIPQTNNSEHLYFPTLEELNEPLLVDNNLESDEDEINQLRPNSFMSLLMTSPTQCFHYYWRKFDDCFMHPIFGGSESSLEHLESSLEHLSP | 536 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 43243000 | 43250446 | - | Lag0002482.1 | Lac4g2362 | 605894 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g2362 | 536 | Gene3D | - | 142 | 194 | - | - | |
| Lac4g2362 | 536 | PRINTS | Na+/H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2362 | 536 | PRINTS | Na+/H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2362 | 536 | PRINTS | Na+/H+ exchanger signature | 150 | 160 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2362 | 536 | PRINTS | Na+/H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2362 | 536 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 22 | 529 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Lac4g2362 | 536 | Pfam | Sodium/hydrogen exchanger family | 28 | 444 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g2362 | Lac-Chr4:43243000 | Lac4g2363 | Lac-Chr4:43253525 | 3.10E-173 | tandem | |
| Lac2g1459 | Lac-Chr2:12531968 | Lac4g2362 | Lac-Chr4:43243000 | 1.50E-24 | transposed | |
| Lac12g2377 | Lac-Chr12:40873218 | Lac4g2362 | Lac-Chr4:43243000 | 6.00E-151 | wgd |
Pathway information