Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g2363 | ATGGAGTCATATTTAGGAAATTCTGTGATGAAGTTCGCTTTGAAAGCAGACCCTGAAGAGCATCGTGTCGCATTGTTTGTTTTACTTCTCTGTGCTTGTATTGTAATCGGGCATCTTCTTGAGAAAAGTCGTTGGATAAATGAATCAGTTACTGCCATTTTCATTGGTCTTGTATCTGGAAGTCTGATCTTATTTACAACCAAAGGCAGAAACTCACGTATCTTAGTGTTTAATGAAGAACTTTTCTTCATTTATGTTCTTCCACCTATAATTTTTAATGCCGGGTTTCAGGTGAAAAAGAAACAGTTCTTTCGAAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGTGATCTCATTTTTCATCATATCACTAGGTTCACTCCATTTATTCAAGAAATTGGATATTGGCTTCTTAGACGTGGGTGATTATTTTGCACTTGGAGCAATCTTATCAGCCACAGACAGTGTTTGCACCTTGCAGGTGCTTAATCAGGACGAGACTCCTTTACTGTATAGTCTGGTCTTTGGTGAAGGTGTGGTTAATGATGCCACCTCTGTTGTCTTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATCACCTCAACCAATGGCTTTCAGCTTCTGGGGAATTTTTTTTATTTATTTTTGACGAGCACCTTGCTGGGAGTAATAGTTGGGTTGTCCAGTGCATACATCATAAAGAAACTGTACTTTGGCAGGCACTCAACTGATCGGGAGGTTGCTTTGATGATTTTAATGCCTTACCTTTCATATATGACTGCTGAATTGTGTAATCTTAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCTCATTACACTTGGCATAATGTGACTGAAAGTTCAAGAGTGACCACCAAGCATACTTTTGCAACATTCTCATTTGTTTCAGAGATTTTCATCTTCTTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTTCTCAAAGGCCTTGGACATCAGCTGGAGTGAGTCTAATACTGCTAGGTTTAGTCCTTGTTGCGAGAGCAGCTTTCGTATTTCCACTCTCTTTTATATCTAACTTGACTAGAACGTCTCAGAGTGACAAGATTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTTTCTGTGGCACTTGCTTATAATCAGTTTACAAGGTTAGGGCACACGCAACTACAAGGGAATGCGATCATGATTACTAGTACAATCACAATCGTTCTCTTTACTAATGTGGTATTTGGACTATTAACTAAGCCTATTGTAAGGTACATGCTTTCACTGCCTGATAGACAATTAGATGGCATAATTGTAGCAAATTCTCCACGTAAGTCGCTGAACGATCCTCTTTTGCCTGGCGGAGAAGATACCGAATCCGATGCCGGAGGATCGAACATTCCCCATCCTACCAGCTTAAGAATGCTGTTGACAACTCCAACTCGTTCTGTCCATTATTATTGGCGGATGTTCGATGATCGATACATGCGTCCCGTTTTTGGTGGAAGAGGTTTTGTACCTTTCATCCCTGGTTCACCAACTGAAAAGTATATCCATTGA | 1608 | 40.36 | MESYLGNSVMKFALKADPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLVSGSLILFTTKGRNSRILVFNEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTVISFFIISLGSLHLFKKLDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVFFKAIQRFDLSHITSTNGFQLLGNFFYLFLTSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATFSFVSEIFIFLYVGMDALDIEKWKVVSQRPWTSAGVSLILLGLVLVARAAFVFPLSFISNLTRTSQSDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRLGHTQLQGNAIMITSTITIVLFTNVVFGLLTKPIVRYMLSLPDRQLDGIIVANSPRKSLNDPLLPGGEDTESDAGGSNIPHPTSLRMLLTTPTRSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTEKYIH | 535 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 43253525 | 43262823 | - | Lag0002483.1 | Lac4g2363 | 605895 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g2363 | 535 | Gene3D | - | 143 | 194 | - | - | |
| Lac4g2363 | 535 | MobiDBLite | consensus disorder prediction | 464 | 488 | - | - | |
| Lac4g2363 | 535 | NCBIfam | sodium/hydrogen exchanger 3 | 22 | 442 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2363 | 535 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 18 | 525 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Lac4g2363 | 535 | PRINTS | Na+/H+ exchanger signature | 150 | 160 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2363 | 535 | PRINTS | Na+/H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2363 | 535 | PRINTS | Na+/H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2363 | 535 | PRINTS | Na+/H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac4g2363 | 535 | Pfam | Sodium/hydrogen exchanger family | 32 | 440 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g1601 | Lac-Chr10:16996695 | Lac4g2363 | Lac-Chr4:43253525 | 5.00E-22 | dispersed | |
| Lac12g2377 | Lac-Chr12:40873218 | Lac4g2363 | Lac-Chr4:43253525 | 5.20E-179 | dispersed | |
| Lac3g2313 | Lac-Chr3:32055108 | Lac4g2363 | Lac-Chr4:43253525 | 7.00E-202 | dispersed | |
| Lac4g2362 | Lac-Chr4:43243000 | Lac4g2363 | Lac-Chr4:43253525 | 3.10E-173 | tandem |
Pathway information