Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2401 ATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCGGAGGAGTTGGTGGCAGCACCGGTGGATCGAGCGAGGAAGCCGGTAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCAATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAGCGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATAGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCCATAATAATAGTAGTAATAATCATGATGCATGA 480 47.29 MDDNTGKQERLVEFKYDFSTGGGGGVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSSNNHDA 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43556351 43556830 + Lag0002521.1 Lac4g2401 605933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2401 159 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 42 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lac4g2401 159 SUPERFAMILY Histone-fold 48 156 IPR009072 GO:0046982(InterPro)
Lac4g2401 159 Gene3D Histone, subunit A 44 159 IPR009072 GO:0046982(InterPro)
Lac4g2401 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Lac4g2401 159 FunFam Nuclear transcription factor Y subunit B-3 41 159 - -
Lac4g2401 159 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g2401 159 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Lac4g2401 159 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Lac4g2401 159 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0506 Lac-Chr3:3883741 Lac4g2401 Lac-Chr4:43556351 6.70E-12 dispersed
Lac3g2728 Lac-Chr3:42705135 Lac4g2401 Lac-Chr4:43556351 3.40E-28 dispersed
Lac4g2401 Lac-Chr4:43556351 Lac5g0795 Lac-Chr5:10703103 1.20E-40 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23750 PF00808 CBFD_NFYB_HMF 6.80E-27 CL0012 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2401 K08065 - csv:101204763 264.233