Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2401 ATGGATGATAACACAGGCAAGCAAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCACCGGAGGCGGCGGAGGAGTTGGTGGCAGCACCGGTGGATCGAGCGAGGAAGCCGGTAGCGGTGTCGGTGTCGTCGTAAAAGAGCAAGATCGGTTGCTGCCAATAGCAAACGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCGAAAATCTCGAAAGAAGCGAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACCGGGGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGAGATGACATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATAGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCCATAATAATAGTAGTAATAATCATGATGCATGA 480 47.29 MDDNTGKQERLVEFKYDFSTGGGGGVGGSTGGSSEEAGSGVGVVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREIEGERAQQNKGCCHNNSSNNHDA 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43556351 43556830 + Lag0002521.1 Lac4g2401 605933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2401 159 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 42 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lac4g2401 159 SUPERFAMILY Histone-fold 48 156 IPR009072 GO:0046982(InterPro)
Lac4g2401 159 Gene3D Histone, subunit A 44 159 IPR009072 GO:0046982(InterPro)
Lac4g2401 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Lac4g2401 159 FunFam Nuclear transcription factor Y subunit B-3 41 159 - -
Lac4g2401 159 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g2401 159 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Lac4g2401 159 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Lac4g2401 159 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2401 K08065 - - csv:101204763 264.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0506 Lac-Chr3:3883741 Lac4g2401 Lac-Chr4:43556351 6.70E-12 dispersed
Lac3g2728 Lac-Chr3:42705135 Lac4g2401 Lac-Chr4:43556351 3.40E-28 dispersed
Lac4g2401 Lac-Chr4:43556351 Lac5g0795 Lac-Chr5:10703103 1.20E-40 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0828 . 7 148 CCAAT-HAP3 Transcription Factor Family AT5G47670 67.6 1.3e-48 190.7
Lac9g1948 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.1e-37 154.5
Lac5g0828 . 45 172 CCAAT-HAP3 Transcription Factor Family AT1G21970 70.1 3.6e-49 192.6
Lac5g2027 . 4 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 51.4 3.2e-37 152.9
Lac9g1948 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.9 1.4e-57 219.9
Lac5g0795 . 1 150 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.3 1.2e-51 200.3
Lac5g2027 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 8.7e-47 184.1
Lac10g3050 . 34 148 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.4 1.5e-43 173.3
Lac4g2401 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.0 7.4e-38 154.5
Lac10g3050 . 34 148 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.4e-48 188.3
Lac9g1948 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.1e-42 169.5
Lac5g0795 . 1 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.3 3.6e-42 168.7
Lac5g2027 . 14 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.6 3.0e-41 165.6
Lac4g2401 . 45 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.2 9.1e-38 154.1
Lac4g2401 . 42 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 83.0 6.8e-44 174.5
Lac5g0795 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.1 3.5e-40 162.2
Lac9g1948 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 8.6e-39 157.5
Lac5g2027 . 32 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 2.1e-37 152.9
Lac10g3050 . 40 204 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.1 3.0e-61 232.3
Lac9g1948 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.9e-44 176.4
Lac5g0795 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.7 8.2e-43 171.0
Lac5g2027 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 5.9e-41 164.9
Lac4g2401 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 1.5e-36 150.2
Lac5g2027 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 3.2e-44 176.0
Lac9g1948 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 5.4e-44 175.3
Lac5g0795 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.3 1.1e-41 167.5
Lac10g3050 . 40 153 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.9e-41 166.8
Lac4g2401 . 46 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 2.0e-38 156.8
Lac9g1948 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 8.1e-52 201.1
Lac5g0795 . 1 119 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.0 1.9e-48 189.9
Lac5g2027 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.3e-44 177.2
Lac10g3050 . 44 157 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 7.6e-42 167.9
Lac4g2401 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.4 3.5e-39 159.1
Lac10g3050 . 45 204 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.7 2.8e-59 225.7
Lac9g1948 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 4.0e-45 178.7
Lac5g0795 . 6 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.6 1.7e-43 173.3
Lac5g2027 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 1.0e-40 164.1
Lac4g2401 . 45 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 3.1e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23750 PF00808 CBFD_NFYB_HMF 6.80E-27 CL0012 Lac TF