Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2404 ATGAGGAGGAAATACAAAACCCTAAGAACGACGATGAGGAAGAAGATGAAAGGGGCATTAACGAGGCACTTGCAGGTTCATCTAGGCCAGGTTTCTCTCGCCCCTCTCCACCTCAACCGCGCCTCTTCCGCCGCCTCTTGCTTCCAGGACTTGCCTGAATCTGAAGCTCCCGCCACGGTCAACGGTTCCGATGCTCTCCCCTCCTCGTCTCCTAACTTCGAGGACAGAGACTTCATTCTTAGCCAAGACTTCTTTTGCACTCCTGACTATATCACCCCGGACAATCAAAATCTGTTGAATGGTTTGGATTGCAACGAGGAAACCACTCCTTGCCCCAAATCTCCAGAGAAGATCACTACTATTAAAACGAAGAGGAAAATACATGATGGGCTTTTAGTGCATCCTCTGAGTCCAAGTTTGTCTGGCCGTGAACAAGTTGTGGAGCTTGGAAATGACACTTTTGGGACAGATGATGTGGATATGGAGAAAGAGGCAATGGCAATGCCGAAGAAACCAAACTATGTTTCTCAATCAGCAGTTGCTCTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACTTGAAAGATGCTTCTGACGTAGGTGTAGACCCATTTGGTAATCAACGAACAAAATGTGCAGGATTTTTTCCTGCGCTGTTTAGTGGAGATGGTCTTTCAAGATATCACACTGATTTTCATGAGATAAAGCAAATAGGAACTGGAAATTTTAGCCGTGTCTTCAAGGTATTTAAGAGAATTGATGGTTGCTTGTATGCTGTCAAACAAAGCACAAGACCATTGCATCAAGACGTAGAGAGGAGGCGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATCGTTGGTTACTACTCTTCGTGGTTTGAAAATGAGCAACTCTACATTCAAATGGAACTCTGCGATTGTAGCTTATCCATTGGCCGGTATTCTCACCCATTCTCTGAGGCAGATGCGCTGAGAGCCTTGTTTCAGATTGCAAAAGCATTGCAGTTTGTGCACGAGAAAGGAGTAGCTCATTTAGATGTGAAACCTGACAATATTTATGTCAAAGATGGTGTTTATAAACTTGGTGATTTTGGATGCGCTACTCTTCTTGATAAAAGCCTACCAATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAGAGATATGATTATCTTGACAAGGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAGATTGTGCGAGGTTCAACATTGCCACAAGCACATTTCATGAATCTGAAGGAGGGAAAATTGCCGCTCCTTCCTGGTCACTCGTTGCAATTTCAAAACTTAATCAAGGCCATGGTGGATCCCGACCCAGCACGACGGCCTTCAGCGTGGGAAATTATTGAGAATCCCATATTTGATAAGATGGGCTTTGTATGTGCAATCCCTTGGTATCAGCCTGCTGCTATTTTGTAA 1488 44.35 MRRKYKTLRTTMRKKMKGALTRHLQVHLGQVSLAPLHLNRASSAASCFQDLPESEAPATVNGSDALPSSSPNFEDRDFILSQDFFCTPDYITPDNQNLLNGLDCNEETTPCPKSPEKITTIKTKRKIHDGLLVHPLSPSLSGREQVVELGNDTFGTDDVDMEKEAMAMPKKPNYVSQSAVALRCRVMPPPCMKNPYLKDASDVGVDPFGNQRTKCAGFFPALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVFKRIDGCLYAVKQSTRPLHQDVERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSIGRYSHPFSEADALRALFQIAKALQFVHEKGVAHLDVKPDNIYVKDGVYKLGDFGCATLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIVRGSTLPQAHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPARRPSAWEIIENPIFDKMGFVCAIPWYQPAAIL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43591745 43597055 - Lag0002524.1 Lac4g2404 605936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2404 495 ProSitePatterns Protein kinases ATP-binding region signature. 241 264 IPR017441 GO:0005524(InterPro)
Lac4g2404 495 SMART serkin_6 235 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2404 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2404 495 ProSiteProfiles Protein kinase domain profile. 235 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2404 495 Gene3D Phosphorylase Kinase; domain 1 225 314 - -
Lac4g2404 495 SUPERFAMILY Protein kinase-like (PK-like) 228 488 IPR011009 -
Lac4g2404 495 Gene3D Transferase(Phosphotransferase) domain 1 315 481 - -
Lac4g2404 495 Pfam Protein kinase domain 235 477 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2404 495 FunFam WEE protein kinase 225 313 - -
Lac4g2404 495 FunFam Wee1-like protein kinase 314 481 - -
Lac4g2404 495 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 42 472 IPR050339 GO:0004672(PANTHER)|GO:0004713(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2404 Lac-Chr4:43591745 Lac7g0589 Lac-Chr7:4704231 6.00E-22 dispersed
Lac4g2404 Lac-Chr4:43591745 Lac1g2423 Lac-Chr1:45675065 1.10E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86146 PF00069 Pkinase 2.50E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2404 K06632 - csv:101213255 855.899