Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2484 ATGTACAGAGATCAAATCCCTTCAAATCCCGCCTCCATTTCCGCCATTTTCACCTCCTTCTTCTTCCTCTTCCTCTTCTCTTCCAAACCCATTTCTTCGAATCCCCAAATTCACCAGACAGCTCTCTCCCTCTGCAATGGCACTCTGTACCCACACCTCTGTTTCTCAAAACTCACCTCTTTCCCCGAATTGGCCTCCCTCTCGCCGGAAAAGCTCGCCAGCAGCGCCCTCAACTTCACCGACGCCGAGGTCCACGGCGCCTACGCCAATTGCACCAAGCTCAAGACCCTCCTCTACGGCAGCCTCAATCCCACCGACCGCCGCGCTCTCGATGACTGCATCGAGCTTCTCGACGGCAGCATTGCTGAGCTCGAAACTTTGATTTCCGATCTGGCGCCGTCGCAGTCCGCCGCCAGCCACTCCCACGATCTCTTGACGTTGGTCAGCGCCGCCATGACCAACCACCGGACTTGTATTGATGGATTTTACAACAGTTCCGGGACTGTGAGGAGCCGGGTGGAGCTGTATTTGGGGAAAATTGAACAGCATTTGAGTATTGATTTGGCAATGTTGAAGAAAATCCCTGGAGTTAATCGGGCTACGGCGGCGGAGGAGGTGTTGCCGGAGTATGGGGCGGTGAGGGGTGGGTTTCCGATGTGGGTTTCGGTTAAGGATCGGAGACTGTTGCAGGCGGCGGTGAATGAGACGAAGTTTGATTTGGTGGTGGCGAAGGACGGCTCCGGGAATTTCACCACCGTTGGTGAAGCAGTCGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGAGCTTATTTTGAGAATGTAGAAATAGAAAGGAAAAAGACAAACTTGATGTTCGTCGGCGACGGGATCGGAAAAACGCTGATAAAGGGCAACCGGAACGTCGTCGACGGCTGGACTACTTTCCGGTCAGCCACTGTCGCGGCGGTTGGCAGCGGGTTCATAGCCAAAGGCATAACCTTTGAAAACTTCGCCGGTCCGAGCAAGCACCAAGCCGTAGCCTTAAGAAGCAACTCCGACTTGTCGGCATTTTACCAATGCAGCTTCATCGGCTATCAAGACACTCTCTACGTTCACTCCCTCCGCCAATTCTACCGTGAATGCGACGTCTACGGCACCATCGACTTCATCTTCGGCAACGCCGCTGTCGTCTTCCAAAACTGCAACCTCTACGCCCGAAAACCCAACTCCAACCAACGCAACATATTCACCGCTCAGGGCCGTGAGGACCCCAACCAGAACACCGGAATTTCAATCCTCAATTGCAAGGTTGAAGCTGCCTCCGACTTGATCCCGGTTCTTTCCTTGTTTAAGACCTACTTGGGCCGGCCTTGGAAGTTGTACTCGAGGACGGTTTTCCTCCGGTCGTTTATTGGGCAGTTGGTCGACCCGGCCGGGTGGCTTGAGTGGAACGGGACGTTTGCGTTGGATACTTTGTATTATGGGGAGTACTTGAACCGGGGGCCAGGTTCGAATACCACCGGACGGGTTACTTGGCCAGGTTATCGGGTGATTACTAACTCGACGGAGGCGAGTCAGTTTACGGTTGAGGCGTTTATACAAGGAACCTCGTGGTTGAACTCGACCGGGATTCCTTTCTTCTCCGGTTTGGCTTGA 1656 53.8 MYRDQIPSNPASISAIFTSFFFLFLFSSKPISSNPQIHQTALSLCNGTLYPHLCFSKLTSFPELASLSPEKLASSALNFTDAEVHGAYANCTKLKTLLYGSLNPTDRRALDDCIELLDGSIAELETLISDLAPSQSAASHSHDLLTLVSAAMTNHRTCIDGFYNSSGTVRSRVELYLGKIEQHLSIDLAMLKKIPGVNRATAAEEVLPEYGAVRGGFPMWVSVKDRRLLQAAVNETKFDLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKGNRNVVDGWTTFRSATVAAVGSGFIAKGITFENFAGPSKHQAVALRSNSDLSAFYQCSFIGYQDTLYVHSLRQFYRECDVYGTIDFIFGNAAVVFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSLFKTYLGRPWKLYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNTTGRVTWPGYRVITNSTEASQFTVEAFIQGTSWLNSTGIPFFSGLA 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44164172 44168982 - Lag0002604.1 Lac4g2484 606016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2484 551 PANTHER PECTINESTERASE 19 541 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac4g2484 551 NCBIfam pectinesterase inhibitor domain 16 193 IPR006501 GO:0004857(InterPro)
Lac4g2484 551 FunFam Pectinesterase 233 550 - -
Lac4g2484 551 CDD PMEI-like_3 43 196 - -
Lac4g2484 551 Pfam Plant invertase/pectin methylesterase inhibitor 43 190 IPR006501 GO:0004857(InterPro)
Lac4g2484 551 Pfam Pectinesterase 239 535 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac4g2484 551 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Lac4g2484 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 195 IPR035513 -
Lac4g2484 551 SMART PMEI_2 37 190 IPR006501 GO:0004857(InterPro)
Lac4g2484 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 196 IPR035513 -
Lac4g2484 551 SUPERFAMILY Pectin lyase-like 237 549 IPR011050 -
Lac4g2484 551 Gene3D - 233 550 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0154 Lac-Chr11:1433242 Lac4g2484 Lac-Chr4:44164172 8.40E-140 dispersed
Lac11g0818 Lac-Chr11:8734455 Lac4g2484 Lac-Chr4:44164172 1.20E-71 dispersed
Lac12g2508 Lac-Chr12:42045189 Lac4g2484 Lac-Chr4:44164172 1.40E-131 dispersed
Lac1g3230 Lac-Chr1:52275564 Lac4g2484 Lac-Chr4:44164172 4.60E-124 dispersed
Lac4g1473 Lac-Chr4:33249614 Lac4g2484 Lac-Chr4:44164172 4.10E-72 dispersed
Lac4g2484 Lac-Chr4:44164172 Lac4g3068 Lac-Chr4:48810519 7.10E-141 dispersed
Lac4g2484 Lac-Chr4:44164172 Lac4g2485 Lac-Chr4:44186106 3.30E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2484 K01051 - csv:101205557 953.355