Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2485 ATGGCGGCCGGGCCCACCACCTCATTCTATTCTCTCATCCTCCTGATCTTCCTCTACCTCACCACCTCCACCGCCACCCCTCCGCCGCCCCCCACCGGATCGGTCTGCAGCTCGACCCCAGACCCCTCCTACTGCAAATCGGCCCTCCCGAACCAGACCGGCAATGTGTACTCGTACGGGCGGTCGTCGGTGAGAAAATCGCTGTCGTCGTCGCAGAAGTTCCTCCGGCTGGTCGAGAAGCACCTCCGGTCGAGGTCGTCGCTGACGGTGGCGGCGGTGAGGGCCCTGGAGGACTGCCAGGTGCTGGCGGGACTGAACATGGACTACTTGACGACGTCGTTCCGGACGGTGAACACGACGAGCAGGACGCTGCCGGAGATGAAGGCGGACGAGGTTCAGAGTTTGCTGAGTGCGATATTGACGAATCAGCAGACTTGCTTGGATGGGCTCAAGGCCACGGCGGGTTCTTGGTCTCTCAAAAATGGCCTTTCCCTCCCACTTGCCGCTGACACCAAGCTCTACTCAATGTCTTTGGCCTTATTTACTAAAGGTTGGGTTCCAAAGAAGAAGAAAAGGCCGACATGGAAGGCCGCCGGAAGACAGGGCGGGTTCAGAAACGGACGAATGTCACTCAAAATGTCGAGCAGAACCCAAGCGATCTACGAGACGGCGACTCGCCGGCATCTGCTGCAGACCGACGACGGCGGCGACGACCAGATTTCGGTGAGGGACATCGTCGTCGTCAGCCAAGACGGCACCGGAAATTTCACAACCATCAATGAAGCGATTGCGGCGGCGCCCAACAACTCTGCTCCGACCGACGGCTATTTCTTGATATTCGTGTCGGCCGGAGTTTATGAAGAATACGTGTTGATCGCGAAGAACAAAAGGTACTTGATGATGATCGGAGATGGCATCAATCAGACCGTTGTCACCGGTAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACGTTTGCGGTGGTGGGACCCGGATTCGTCGCAGTAAACATGACATTCAGAAACACCGCCGGAGCAATCAAGCACCAGGCCGTCGCCGTCCGTAACGGCGCCGACTTATCCACCTTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACCTTATACACCCACTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATCTACCCCCGCCTTCCCATGCCCAACCAGTTCAACGCCATCACCGCCCAGGGCCGGACCGACCCCAACCAGAACACCGGCACCTCCATCCACAACTGCCGGATCACCGCCGCCGACGACCTCGCCAACAACACCGCCGCCGCCGTCAAGACCTTCCTCGGCCGCCCCTGGAAGGAGTACTCGCGGACGGTGTATCTCCAGAGCTTCATGGACGATTTGATTAATCCGGCAGGGTGGAGGGCTTGGGACGGCGATTTTGCTCTGAACACTTCGTATTATGCGGAGTTTGGGAATTTCGGCCCGGGATCCAACACGTCGGAGAGGGTGACTTGGCCGGGATTTCATTTGATCAATGATAGCGATGCGGGGAATTTCACGGCGGCGAATTTTGTGTTGGCCGACGATTGGCTGCCGCAGACCGGCGTTCCGTACACCAGCGGCTTGACGGAGTAG 1686 58.54 MAAGPTTSFYSLILLIFLYLTTSTATPPPPPTGSVCSSTPDPSYCKSALPNQTGNVYSYGRSSVRKSLSSSQKFLRLVEKHLRSRSSLTVAAVRALEDCQVLAGLNMDYLTTSFRTVNTTSRTLPEMKADEVQSLLSAILTNQQTCLDGLKATAGSWSLKNGLSLPLAADTKLYSMSLALFTKGWVPKKKKRPTWKAAGRQGGFRNGRMSLKMSSRTQAIYETATRRHLLQTDDGGDDQISVRDIVVVSQDGTGNFTTINEAIAAAPNNSAPTDGYFLIFVSAGVYEEYVLIAKNKRYLMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMPNQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANNTAAAVKTFLGRPWKEYSRTVYLQSFMDDLINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVTWPGFHLINDSDAGNFTAANFVLADDWLPQTGVPYTSGLTE 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44186106 44189447 + Lag0002605.1 Lac4g2485 606017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2485 561 CDD PMEI-like_3 34 185 - -
Lac4g2485 561 SMART PMEI_2 27 180 IPR006501 GO:0004857(InterPro)
Lac4g2485 561 FunFam Pectinesterase 33 183 - -
Lac4g2485 561 Pfam Plant invertase/pectin methylesterase inhibitor 34 180 IPR006501 GO:0004857(InterPro)
Lac4g2485 561 FunFam Pectinesterase 239 559 - -
Lac4g2485 561 SUPERFAMILY Pectin lyase-like 244 558 IPR011050 -
Lac4g2485 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 183 IPR035513 -
Lac4g2485 561 PANTHER PECTINESTERASE 9 550 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac4g2485 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 183 IPR035513 -
Lac4g2485 561 Pfam Pectinesterase 246 543 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac4g2485 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Lac4g2485 561 Gene3D - 240 559 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0573 Lac-Chr13:4247371 Lac4g2485 Lac-Chr4:44186106 7.50E-146 dispersed
Lac2g0774 Lac-Chr2:5992757 Lac4g2485 Lac-Chr4:44186106 1.90E-186 dispersed
Lac4g2485 Lac-Chr4:44186106 Lac9g0505 Lac-Chr9:9587043 3.90E-163 dispersed
Lac4g2484 Lac-Chr4:44164172 Lac4g2485 Lac-Chr4:44186106 3.30E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2485 K01051 - csv:101205321 1006.51