Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2489 ATGGCTACCGATTCTCATGCCCCTAACCCAAGGGGTCTTCTCTGTAGTGCTGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTCATCAAGACTAGATTTCAGGTTCATGGACTGCCAAATATTGGAAAAGGGAGTCTTATAGTTGGTAGTCTGAAACAAATTGTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGACTCTCACCTACTGTGCTTGCACTACTTCCTAACTGGGCTGTTTATTTCACAATATATGGGCAGCTTAAAAGCTTTCTTGGCTCCGATGATGAAAGTCGTCAGCTTTCAATAGGTGCTAATATGTTGGCTGCTTCTGGTGCTGGGGCTGCTACAACTATTGCAACTAATCCTCTATGGGTAGTTAAGACCAGACTTCAGACGCAGGGAATGAAATCTGGTAGCGCACCATATAGAAATACAGTGTCTGCCTTGAAGAGAATAGCCTGTGAAGAAGGCATCCGTGGATTGTACAGTGGTCTTGTGCCCGCTTTGGCTGGTGTAAGTCACGTCGCGATCCAGTTTCCAACATATGAGAAAATAAAAAGTTATTTAGCTGGAAGAGACAATAAGACGACGGATAAACTCAGCGCACGTGATGTTGCGGTTGCTTCATCTGTCTCCAAGATATTTGCTTCCACATTGACCTATCCACATGAGGTTGTACGTTCCAGGCTGCAGGCACAAGGGGTTCACTCCGAGAAGCGCTATTCTGGCGTAACTGATTGCGTAAAGAAAGTATTTCAGCAAGATGGTCTCGCCGGTTTCTATCGAGGATGCGCAACCAACCTTCTTAGGACGACGCCTGCTGCTGTCATCACGTTTACCAGCTTTGAGATGATTCATCGTTTTCTTGTCAACTTATTTCCTCACGATCCACATCCACACACGCTATGA 936 46.26 MATDSHAPNPRGLLCSAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLKQIVHKEGLRGMYRGLSPTVLALLPNWAVYFTIYGQLKSFLGSDDESRQLSIGANMLAASGAGAATTIATNPLWVVKTRLQTQGMKSGSAPYRNTVSALKRIACEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKSYLAGRDNKTTDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQAQGVHSEKRYSGVTDCVKKVFQQDGLAGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLFPHDPHPHTL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44220013 44223122 - Lag0002609.1 Lac4g2489 606021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2489 311 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 105 - -
Lac4g2489 311 FunFam NAD+ transporter 107 302 - -
Lac4g2489 311 SUPERFAMILY Mitochondrial carrier 11 293 IPR023395 -
Lac4g2489 311 Gene3D Mitochondrial carrier domain 2 104 IPR023395 -
Lac4g2489 311 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085(InterPro)
Lac4g2489 311 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085(InterPro)
Lac4g2489 311 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085(InterPro)
Lac4g2489 311 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085(InterPro)
Lac4g2489 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085(InterPro)
Lac4g2489 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Lac4g2489 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Lac4g2489 311 Gene3D Mitochondrial carrier domain 105 301 IPR023395 -
Lac4g2489 311 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 302 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)
Lac4g2489 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
Lac4g2489 311 Pfam Mitochondrial carrier protein 14 102 IPR018108 -
Lac4g2489 311 Pfam Mitochondrial carrier protein 108 200 IPR018108 -
Lac4g2489 311 Pfam Mitochondrial carrier protein 214 300 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2961 Lac-Chr1:50406302 Lac4g2489 Lac-Chr4:44220013 3.20E-50 dispersed
Lac4g2489 Lac-Chr4:44220013 Lac8g1479 Lac-Chr8:32088887 5.40E-114 dispersed
Lac4g2489 Lac-Chr4:44220013 Lac2g0617 Lac-Chr2:4641043 1.20E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2489 K15115 - csv:101204681 544.273