Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2493 ATGGCGACGAGGAATCGAACCGCGCAGTTCAGAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTGGTTCGAGCGGGGCAGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGCTCTTCTTCTTACGCTCCTCTCAGCACTGAAGATCCAGGACCTTCCAGCAGTGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACAGTTAATATACAGCAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCCGATGGCAGAGAAGATCAGCATACAATTGAGGCACTTACGCAAGAGATTACCAATCTTTTGAAAACCTCTGAGAAGAGGTTGAAGAAAATTTCTAGTACTGGATCCTCAGAGGATATGAACATTAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCTATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATTTGAATGGCAACAAAACTCTACATGAGGATGGTGAATATGGTGAATTTGGAACCATTGAAAACCAAACGATGACATTTGGAATTGATGAGCAGCACATCCAGGGAAGGGAGAAAGAGATCAGACAGGTTGTGAAATCAGTAAATGAGCTTGCACAAATTATGAAGGATCTCTCAACCCTTGTCATAGACCAGGGTACTATAGTCGATAGGATCGACCACAATATTCAGAATGTTGCTACAACCGTGGAAGAGGGCTATAAACAGCTTCAGAAGGCGGAGAAGACTCAGAAGGATGGAGGAATGGTGAAGTGTGCAACGGTGCTTGTTATTATGTGTTTCGTAATGCTGGCGGCTCCTCGGCTTGGATTTAGCATGCCATGCAGTGTAGTTTAG 981 44.65 MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGAVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSSDAFMVGLPPAWVDDSEEITVNIQQIRRKMAELVKAHSKALMPSFADGREDQHTIEALTQEITNLLKTSEKRLKKISSTGSSEDMNIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNKTLHEDGEYGEFGTIENQTMTFGIDEQHIQGREKEIRQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVATTVEEGYKQLQKAEKTQKDGGMVKCATVLVIMCFVMLAAPRLGFSMPCSVV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44239100 44243282 + Lag0002613.1 Lac4g2493 606025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2493 326 ProSitePatterns Syntaxin / epimorphin family signature. 232 271 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lac4g2493 326 CDD SNARE_syntaxin16 229 287 - -
Lac4g2493 326 SMART tSNARE_6 221 288 IPR000727 -
Lac4g2493 326 MobiDBLite consensus disorder prediction 1 27 - -
Lac4g2493 326 FunFam Syntaxin-43 73 280 - -
Lac4g2493 326 Pfam SNARE domain 262 312 IPR000727 -
Lac4g2493 326 SUPERFAMILY t-snare proteins 72 281 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lac4g2493 326 SMART SynN_4 67 182 IPR006011 GO:0016020(InterPro)
Lac4g2493 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 226 288 IPR000727 -
Lac4g2493 326 Gene3D - 73 280 - -
Lac4g2493 326 PANTHER SYNTAXIN 83 306 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2493 Lac-Chr4:44239100 Lac6g2561 Lac-Chr6:43328197 6.10E-92 dispersed
Lac4g2493 Lac-Chr4:44239100 Lac3g2333 Lac-Chr3:32360533 6.00E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2493 K08489 - csv:101204192 544.273