Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2563 ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCTAAGAGCCTCCCTGTTTTGGAGGTGACTTATTTTGGTAAAGAGACTCATCTTGTTGATGAAATTCAGTCCATCGATGCTGGGATTTCGGTTGATCCCACTCTCGATCGTGTTCGTGCTTCTGAATCTGTTTGTTCCAGCTCTCAATCGGATATTAAACCCATGAAGAAAATTCCAGATTCCGACGCCGATTCGGCCAACGGTTGGGAATTTCCGAGCCTCCGGTCGGGGAGTTTTGCTGATATTGGGCCTAGGAGATATATGGAAGATGAACATATAAGGATAGATGATCTGTCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGGTTTCTATGGGGTGTTTGATGGACATGGAGGACCTGAAGCAGCAGCTTTTATCAGAAAGAATGTTCTTAGACTCTTTTTTGAGGATGTTAGGTTTCCTCAAATGCCAGATGTTGATGAAGTCTTGCCGGAGGAGATAGAAAGTTTTCTCAGGAAGGCATTTCTTCTGGCTGATCAGGCTCTGGCCGATGATTCCGGTGTCAGTAATTCGTCCGGGACGACTGCCCTGACTGCTCTTGTACTTGGAAGGCTTTTAATGGTGGCTAATGTTGGAGATTGCCGGGCTGTTCTCAGCCGGAATGGGGAGGCGGTAGATATGTCTCAAGACCACAGGCCGATTTATTCTCCAGAGAAGCAACGGGTAGAAGAGTTGGGTGGCTTTGTTGATGGTGGCTATCTTAACGGCGTTTTATCGGTTTCCAGGGCCTTGGGGGATTGGGACATGAAGCTCCCCCATGGTTCTCCTTCACCTCTCATCGCAGAACCAGAATGCAGGCAAGTGGTTCTTACGGAGGAGGATGAGTTCTTGATCATAGCTTGCGACGGGATTTGGGATGTGATATCAAGCCAGCAAGCAGTTGATGTAGTTCGACAGGGACTTCAGCGACATGATGACCCTGAGCGATGCGCTCGAGATCTCGTCCTCAAGGCTTTGCGATTAGACTCGTTTGATAATCTCACTGTCGTTATTGTTTGCTTCTCTAGTTTCCATCGTGACAACCCTCCACTACCACAGCAGCGAAAATTGAGATACTGCAGCCTCTCTGCACAGGCCCTTTGTAGCTTGCAGAGATGGTTGGATAAAAGTGGATGCCAATGA 1185 47.68 MVAEAEVVVCSKSLPVLEVTYFGKETHLVDEIQSIDAGISVDPTLDRVRASESVCSSSQSDIKPMKKIPDSDADSANGWEFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSGFYGVFDGHGGPEAAAFIRKNVLRLFFEDVRFPQMPDVDEVLPEEIESFLRKAFLLADQALADDSGVSNSSGTTALTALVLGRLLMVANVGDCRAVLSRNGEAVDMSQDHRPIYSPEKQRVEELGGFVDGGYLNGVLSVSRALGDWDMKLPHGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVISSQQAVDVVRQGLQRHDDPERCARDLVLKALRLDSFDNLTVVIVCFSSFHRDNPPLPQQRKLRYCSLSAQALCSLQRWLDKSGCQ 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44802793 44804632 + Lag0002683.1 Lac4g2563 606095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2563 394 SMART PP2C_SIG_2 100 355 IPR001932 -
Lac4g2563 394 CDD PP2Cc 85 355 IPR001932 -
Lac4g2563 394 FunFam Probable protein phosphatase 2C 22 70 358 - -
Lac4g2563 394 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Lac4g2563 394 SUPERFAMILY PP2C-like 80 357 IPR036457 -
Lac4g2563 394 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
Lac4g2563 394 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Lac4g2563 394 PANTHER PROTEIN PHOSPHATASE 2C 65 355 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lac4g2563 394 SMART PP2C_4 75 353 IPR001932 -
Lac4g2563 394 Gene3D - 65 361 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1003 Lac-Chr11:11300133 Lac4g2563 Lac-Chr4:44802793 1.50E-102 dispersed
Lac2g0532 Lac-Chr2:3980739 Lac4g2563 Lac-Chr4:44802793 1.50E-30 dispersed
Lac4g2563 Lac-Chr4:44802793 Lac6g2864 Lac-Chr6:46261533 4.50E-73 dispersed
Lac4g2563 Lac-Chr4:44802793 Lac2g0725 Lac-Chr2:5585682 8.30E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2563 K14803 - csv:101216626 702.975