Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2582 ATGGGATGCTTTGGTTGCTGCGAAGAGGATGCTATCCAGAAGGCTGCTGATAACAGCAGCATGTACCCAGTAAAAAGTTCAGCAGGAACTGATGAAAGCTATCACAAACGGCAAACTGCACCTAAGAGTCCTCCGATGGTGAAAATGCGGCCTATTGAAGTCCCTGCCATATCATTTCAGGAACTAAAGGAGATTACGAAAAATTTTGATGCAGACTGTTTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGGATTTACAAGTGGGCAGGCTGTGGCAATCAAAAAGTTGGATGACAGCAAACAACCTAACGATGAATTCTTATCCCAGGTTTCCTTGGTTTCAAGACTAAAGCATAACAATTTTCTAAATTTGATTGGGTACTGTGTTGATGGCAATTCTCGAATTCTTGCATATGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCACAACCCGGCCCTGTTCTTTCCTGGGCACAAAGAGTAAAAATTGCTGTTGGTGCTGCAAGGGGTTTGGAGTATTTGCATGAAAAGGCCGATCCTCATATCATCCATCGTGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCAAAAATTGCTGACTTCGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCATTCCACCCGTGTTCTTGGAACATTTGGTTATCATGCTCCCGAATACGCAATGACTGGACAATTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTCATCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTGCCTCGAGGACAGCAAAGCCTCGTGACATGGGCAACACCTAAACTTTGCGAGGACAAAGTTAAGCAGTGCGTTGATGCAAAACTAGGAGATGAGTACCCTCCCAAGTCAGTTGCAAAGTTTGCAGCCGTTGCTGCATTGTGCGTTCAATATGAGGCAGATTTCAGGCCAAACATGAGTATTGTAGTCAAAGCTCTGCAACCTCTGTTAAATGCCCGACCTGGTCTTGCTGGAGAAGCACCAACCCTGTAA 1089 44.44 MGCFGCCEEDAIQKAADNSSMYPVKSSAGTDESYHKRQTAPKSPPMVKMRPIEVPAISFQELKEITKNFDADCLIGEGSYGRVYYGGFTSGQAVAIKKLDDSKQPNDEFLSQVSLVSRLKHNNFLNLIGYCVDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGDEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGLAGEAPTL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44956306 44959380 + Lag0002702.1 Lac4g2582 606114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2582 362 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2582 362 FunFam pto-interacting protein 1 145 356 - -
Lac4g2582 362 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Lac4g2582 362 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Lac4g2582 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2582 362 CDD STKc_IRAK 75 348 - -
Lac4g2582 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
Lac4g2582 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Lac4g2582 362 MobiDBLite consensus disorder prediction 21 47 - -
Lac4g2582 362 SUPERFAMILY Protein kinase-like (PK-like) 44 345 IPR011009 -
Lac4g2582 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2582 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0447 Lac-Chr11:4666933 Lac4g2582 Lac-Chr4:44956306 4.00E-169 dispersed
Lac4g2582 Lac-Chr4:44956306 Lac7g1172 Lac-Chr7:10801545 1.00E-135 dispersed
Lac4g2582 Lac-Chr4:44956306 Lac10g3058 Lac-Chr10:45061822 3.80E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86150 PF07714 PK_Tyr_Ser-Thr 2.20E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2582 K13436 - csv:101215263 674.855