Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2600 ATGATGGATTCCGGCAACCTCTCCTCCTCCTCCTCCTTGCCCCCTCCGATTTTCGTCGGTAAGTTCGAGCTTCGGCCGCTCCTCGATATCCAAATCTCCGAGATCTCTTTCGCTCTCTTTGTGTTCTTCACCATCCATGTCATTAGACAGAAGCGACGGTATGGCTTGTTCGTATGGCCGATCGTTGGGATGTTACCATCTCTGATCACTGCAGCACGTGGGAATCTCTATGAATGGATTACCGACCTGCTCTGCCGCCACAAGGGGACATTTCAATTTCGAGGCCCGTGGTTCAGTAGCCTCAACTGTGTCGTCACGGCCGATCCCCGAAACTTGGAGCATCTTCTCAAGACCAAATTTGCCTCCTACCCTAAAGGCCCATTCTTCCGCGACACGGTGAAAGACCTTCTCGGCGATGGAATATTTGGCGCCGACGATGAGACGTGGCAGCGGCAGAGGAAGGTGGCGAGTATCGAGTTTCACTCGGCGAAGTTCCGACGACTGACAGTGGAGTCGCTGGAGGAGCTTGTGCACTCGAGGCTAGAAGGGGTGTTGGAGGGCTTCGCACGGAGGTCGACGGCGGTGGACCTACAGGATGTTCTTCTAAGGCTGACGTTTGACAATGTGTGTATGATTGCCTTTGGGGCGGATCCCGGCTGCTTGGGCGGTGGCTTGCCGGAGATTCCCTTTGCTAAGGCCTTTGAGGATGCCACTGAGACCACTGTTCTGCGCTTCATCACACCTACTTTCATATGGAAAACAATGAGGTACCTGAACTTGGGAATGGAGAAGAAGCTGAAGCAATCAATAAAAGCCGTCGACGAATTTGCCCAGAATGTGATTCGAACACGGAAGAGAGAACTCTCTGCGGCGGAGCAACCGCAAGCCGATAACCAAAGATCCGACCTACTTACCGTGTTCATGAGGCTCAGAGACGAGCAAGGGCGGCCGTTCTCCGACAAATTCCTCAGAGATATCTGCGTCAATTTCATACTCGCCGGAAGAGACACATCTTCGGTAGCATTGAGTTGGTTCTTCTGGTTGCTCGATCAAAATCCCGACGTGGAAGAGAAAATTCTGGCAGAAATTTACAGAATCGTCGGCGAACGAGAAGAGGCCAAAACCAGAGAGCTTCGATTCGATTCGTTAGTGTTTAAACCAGAGGAAATCAAGAGAATGGAGTATCTGCACGCTGCGATTTCCGAAGCCCTGAGATTGTATCCATCAGTTCCCGTCGATCACAAAGAGGTCGTGGAGGACGATGTATTTCCAGACGGAACGATTCTGAAGAAAGGAACGAAAATCATCTACGCAATATACGCGATGGGGAGAATGGAAGCGATTTGGGGGAAAGATTGTCGTGAATTCAAACCTGAGAGATGGATGAAGGACGGTCGGTTCATGAGTGAATCGGCGTATCGATTCGCCGCCTTCAACGGCGGCCCTCGGCTGTGTCTCGGGAAGGATTTTGCTTACTATCAAATGAAATACGTCGCCGCTTCGATCGTCGGCCGCTACCGGGTGGCGGTGGCGGCGGGACATCCGGTGGAGCCAAAGCTTGCCCTAACTTTCTACATGAAGAACGGCTTGAAGGTCAATTTGATTAAACGAGAAGAGGGGCAGATTCGGAAATACTTGAAGTTAAATTGA 1650 51.52 MMDSGNLSSSSSLPPPIFVGKFELRPLLDIQISEISFALFVFFTIHVIRQKRRYGLFVWPIVGMLPSLITAARGNLYEWITDLLCRHKGTFQFRGPWFSSLNCVVTADPRNLEHLLKTKFASYPKGPFFRDTVKDLLGDGIFGADDETWQRQRKVASIEFHSAKFRRLTVESLEELVHSRLEGVLEGFARRSTAVDLQDVLLRLTFDNVCMIAFGADPGCLGGGLPEIPFAKAFEDATETTVLRFITPTFIWKTMRYLNLGMEKKLKQSIKAVDEFAQNVIRTRKRELSAAEQPQADNQRSDLLTVFMRLRDEQGRPFSDKFLRDICVNFILAGRDTSSVALSWFFWLLDQNPDVEEKILAEIYRIVGEREEAKTRELRFDSLVFKPEEIKRMEYLHAAISEALRLYPSVPVDHKEVVEDDVFPDGTILKKGTKIIYAIYAMGRMEAIWGKDCREFKPERWMKDGRFMSESAYRFAAFNGGPRLCLGKDFAYYQMKYVAASIVGRYRVAVAAGHPVEPKLALTFYMKNGLKVNLIKREEGQIRKYLKLN 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45092971 45095382 - Lag0002720.1 Lac4g2600 606132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2600 549 PRINTS P450 superfamily signature 398 409 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS P450 superfamily signature 476 485 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS P450 superfamily signature 485 496 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 478 487 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac4g2600 549 Pfam Cytochrome P450 58 522 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 Gene3D Cytochrome P450 55 547 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS E-class P450 group I signature 475 485 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS E-class P450 group I signature 51 70 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS E-class P450 group I signature 397 415 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 PRINTS E-class P450 group I signature 485 508 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2600 549 CDD CYP86A 91 530 - -
Lac4g2600 549 PANTHER CYTOCHROME P450 56 530 - -
Lac4g2600 549 FunFam Cytochrome P450 47 540 - -
Lac4g2600 549 SUPERFAMILY Cytochrome P450 55 537 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2291 Lac-Chr10:35049661 Lac4g2600 Lac-Chr4:45092971 2.30E-60 dispersed
Lac10g2877 Lac-Chr10:43301779 Lac4g2600 Lac-Chr4:45092971 4.30E-47 dispersed
Lac12g1712 Lac-Chr12:32960627 Lac4g2600 Lac-Chr4:45092971 7.10E-125 dispersed
Lac3g0089 Lac-Chr3:593029 Lac4g2600 Lac-Chr4:45092971 1.70E-70 dispersed
Lac4g2600 Lac-Chr4:45092971 Lac7g2817 Lac-Chr7:47278181 9.90E-119 dispersed
Lac3g0484 Lac-Chr3:3698087 Lac4g2600 Lac-Chr4:45092971 8.90E-38 transposed
Lac11g0476 Lac-Chr11:4952055 Lac4g2600 Lac-Chr4:45092971 9.60E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2600 K15402 - csv:101212202 967.222