Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2613 ATGAAGAGGTGTGGAGTCGGAGTTGCTGGACACGCCGGAGTCGTTGGAGTCGTCGGAGTCGAACGAGAGAGAAAGAACTGTCGGAGCCGTTGGAACGAGATTGTTAGAAATTTCATATATCGAAAGCTCGAGCAAGTTTATGCTATGGCGGAATCAGAGCGTCGGGCTAAACGCCCTAGAATTATGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATCGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTTTGAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTGTGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGCGTTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAAGATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCCAAAAAAGATGTAGCTGCAATCATTGAAAGGTTTAACATTCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAGCTAACTCCTGTGCAACTTCTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCAATCCTACATCGTGCACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGCCGAGCAGGAAAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGATTGAGTCCATGAAAAAGAAACTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATAGAAGTTAAGGAAAAGGAAAAGGAGGCCAAAAAGAAGTTGGATGAAGCTGCTAACACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAAAATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCTCATTAATGACAATCACAAGAGAAGGATGGAACTTCAAGAAACTGAAAACCATTTGGGGGTACAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTAAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAAGCTAAGCAGGAACTTGAAGCCGCTGAATTAGAACTTCAGAACTTGCCTCCTTACGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTAGAGCTGGAAGTTTCTGCGAGTCAGAAGAGACTTATGAAGTCAGATATTGAAAAAAATATATCCCAAAAAAGAATTACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCATTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTTTATGGTCCAGTGTTGCTTGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATTCCATCCTATGTCTGGAAGTCCTTCATAACTCAAGATTCTGATGATCGTGATATTATGGTAAAAAACTTGGGCTCATTCGGCGTTCCTATCTTAAACTTTGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGGTTTCTGAGGAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAGTTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCTGGAAGTGTGGAGCCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATCGATGGGCTTCGATCCAGGAAAAATGAGCTAGAAGAAGCTGTTTCTGTATTAGAAGATAACTATAAATCATGTCAGAATGAGCTAAGATTGATAGAAGATGAAGAAGCTAAACTTCGCAAACACCGGGATGACATTATAAATACTGTGCAACATGAAAAGAGAAAGCGCCGTGAAATGGAAAATCGCATCGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCAGGAAGATGACCTGGATACTGTTGTGGCCAAGCTTGTTGACCAAGCTGCAAATTTTAACATCCAAAGGTTCCATTGTGCAATTAAAATTAAGCATTTGCTTGTTGAGACCGTTTCTTATAGACAGAGCTTGACTAAGAACCATATGTCCTCCATAGAAATTGAAGCAAAGATCAGAGAATTGGAGGCAAATCTGAAGCAGCACGAAAAGTTTGCTCTGCAAGCATCAGTGCAGTTCGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTTTCAGTTGCCAAGAAGCATGCAGAATCTATTGCTGTGATCACACCTGACCTTGAGAAAGAATTTCTTGAGATGCCTACTACCATTGAGGAATTGGAGGCTGCTATTCAAGATAATATTTCTCAAGCTAATTCCATTCTATTCTTGAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAATACCATTGCGCGGAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGACGTTGATGAGCTAAAGGGAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAGACTTTCAGTCGAAATTTTCAAGAGATGGCTGTTGCTGGGGAAGTGTTATTGGATGAGCATGATATGGACTTTGATCAGTTTGGGATACTTATTAAAGTAAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGCTCGGTGTCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATTAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACGAATACACCACAGTGTTTCCTACTTACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCTAGAGCATGGAGCAATGGAGATAGCTGGGGAACGTTGATGAACTATGTAGGAGAAAGCCGATGTTGA 3306 41.05 MKRCGVGVAGHAGVVGVVGVERERKNCRSRWNEIVRNFIYRKLEQVYAMAESERRAKRPRIMRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAAIIERFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVEKSHDIKNIERAVEKNGDTLDQLKALNAEQEKDVERVRQRDELLKKIESMKKKLPWLKYDMKKAEYIEVKEKEKEAKKKLDEAANTLNDLKEPIEKQKMEKAKLDAKTKKYSTLINDNHKRRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILQAKQELEAAELELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSDIEKNISQKRITLRQCLDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPILNFVGGERRTNQHFEVSEEVRAFGIYSRLDQVFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEEAVSVLEDNYKSCQNELRLIEDEEAKLRKHRDDIINTVQHEKRKRREMENRIDQRKKKLESMEQEDDLDTVVAKLVDQAANFNIQRFHCAIKIKHLLVETVSYRQSLTKNHMSSIEIEAKIRELEANLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKHAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMADVDELKGNWLPTLRRLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45166423 45183098 - Lag0002733.1 Lac4g2613 606145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2613 1101 Gene3D - 895 1070 IPR027417 -
Lac4g2613 1101 Coils Coil 456 476 - -
Lac4g2613 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 797 1052 IPR027417 -
Lac4g2613 1101 Pfam RecF/RecN/SMC N terminal domain 73 1040 IPR003395 -
Lac4g2613 1101 Gene3D - 72 262 IPR027417 -
Lac4g2613 1101 Coils Coil 795 815 - -
Lac4g2613 1101 Coils Coil 300 327 - -
Lac4g2613 1101 Coils Coil 670 746 - -
Lac4g2613 1101 Coils Coil 377 407 - -
Lac4g2613 1101 Coils Coil 890 910 - -
Lac4g2613 1101 FunFam Structural maintenance of chromosomes 5 897 1068 - -
Lac4g2613 1101 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 49 1093 IPR027131 GO:0000724(PANTHER)|GO:0000724(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Lac4g2613 1101 Coils Coil 243 277 - -
Lac4g2613 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 1044 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2613 K22803 - - csv:101210248 1949.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2613 Lac-Chr4:45166423 Lac5g2789 Lac-Chr5:46257544 2.20E-08 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g2613 . 52 1092 Structural Maintenance of Chromosomes family AT5G15920 69.2 0.0e+00 1400.6
Lac5g2787 . 10 650 Structural Maintenance of Chromosomes family AT5G07660 59.7 9.5e-219 758.1
Lac5g2789 . 3 368 Structural Maintenance of Chromosomes family AT5G07660 65.8 7.7e-128 456.1
Lac5g2787 . 2 643 Structural Maintenance of Chromosomes family AT5G61460 63.1 3.6e-234 809.3
Lac5g2789 . 3 368 Structural Maintenance of Chromosomes family AT5G61460 69.9 2.9e-135 480.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32