Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2643 ATGGCGAGGACTAGGGTTCATGAGCCATCGCGAATGTTAGCACGTAATACATGCACGATTCGGCTGACTGAAATTTTCGGGAGGGCGACCAGGTCTATTTTGGGCTTCTTTCTCATGGTGGGTCTCTGCAATGGCGTGCATTACCTTTTGAAGTCCTTCTCTCAACCTCGCATTACCTCTGATACGATTGTAGGTTTGGTTGTTGGCAACTTCATGAGGAAAGGACTTGATCTATCGACGATTAAGACACTGCGTTATATCGTTGACTTTGGTATGATATGCTATATGTTTGTACTGGGATTGGAGATGGATCCACATGTACTCTTCAAAGCACCTACACGTGATGCTAAAGTAGCTTATGCTGGAATGATTTCGACACTCGTCTTAGCCTGTTCCATAACCCCATTTGTCAGCTTTTCAAAGACAAAAGAGATCAGTTTCATTCTCTCCCTCTCAACTGTCCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATCACCGATCTTAAAATAGGCAAGTCAGATATAGGCCGCCTCGTTATTGCTGCTGGGATGCATTCTGATTTTATATCCACTCTCATTATCTGTATCGGTTATCTCTTTTGCAAATGTCAAGAGACACGCATCTCCTTAATAAAAGGTTTTCAACTAGGTGTTATGTTACTGATCCAGTCAGTAATCACAGCGAAGGTTTCACCGGTATTCATGAACTGGGTAAATAATGAAAACCCCGAAGGTAAGCCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTTCTTTGCAGCTGCCCTACTATATTTGGTTACAATCCGATTCTCAGTGCATTCTTAGCTGGAACGTTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACCATTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATGCAAGTTGAGTGACTTTGAACCTGGACAATTAATGACATGGGTCAGGTTAATTCTGCTTTTTGCTATTGCAACTGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGCGCAATTTTGGGATTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTAGCCATTGCTGCAAGAACCGCTGGAAAGACGACTACATCTACAAGCATTGTGATGGTAACTGTAATCTTCTTCACAATCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAAAGGGCGAGGAAACGCACACCTACACATCGAATGGCACTCCAATTGCTTGATCCATCAAGTGAGCTTAGGATTTTGCTGTGTGTACATGGACCTCAGAACACTCCAGCAGCCATTAACATTATGGAGATCTCTCGAGGGACAGCTAACCCTGGAGTTGTTGTCTATGTCACAGACATGATTGAACTTACAGATGAAATAGCAGCCACATTAGTGCAAGGTGAAGGAGTGGACACCGTGACTGTAACCCACACCGGAGTGACACAAATAAGAGACCAAGTTACCGCTGCAGTTCAGAGCTATGTAGATGAAAATGGAGAAGGAATTACCCTCAGAAGAATGTTAGCTCTCTCAACACTCAATTCTATGGCTCAAGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTTCACAAGATCCCCCGTGGAGATGGGTCGTTGAGTGAGGGCCACACAGGTTTCCGCTACGTAAACCGCAAGGTTCTCAGGAATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTAGAGAAAATTTCAAGGTCGTATGTATCTCAGAATGTGGCAGTCATCTTCATTGGTGGTAAAGATGACCGAGAAGCATTAGCCTACGCAGGTCGAGTTGCAAGGCATCCAGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACTAGACGATGAATGCTTTGCTTATTTTTATGAACGACATGTGGCTGGTGGGCATGTTGCTTATGTCGAAAAACACCTTGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCATTTGAAGGGCAATATGCACTCATAATCGTCGGTCGAGGTGGAGGTGGAAGAGTCAACTCAGTGCTAACTTTTGGGATGAATGACTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGATGTTCTTTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCAACAACACAATCTAAAAGGAGAACTAGATGGACTTGATGACGATTTTTCAATTATGTAG 2379 43.93 MARTRVHEPSRMLARNTCTIRLTEIFGRATRSILGFFLMVGLCNGVHYLLKSFSQPRITSDTIVGLVVGNFMRKGLDLSTIKTLRYIVDFGMICYMFVLGLEMDPHVLFKAPTRDAKVAYAGMISTLVLACSITPFVSFSKTKEISFILSLSTVLSSTASPVLTRLITDLKIGKSDIGRLVIAAGMHSDFISTLIICIGYLFCKCQETRISLIKGFQLGVMLLIQSVITAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCSCPTIFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTIFYPIFFFWMGVECKLSDFEPGQLMTWVRLILLFAIATVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAARTAGKTTTSTSIVMVTVIFFTIVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELRILLCVHGPQNTPAAINIMEISRGTANPGVVVYVTDMIELTDEIAATLVQGEGVDTVTVTHTGVTQIRDQVTAAVQSYVDENGEGITLRRMLALSTLNSMAQDICILAEELMGALIILPFHKIPRGDGSLSEGHTGFRYVNRKVLRNAPCSVGILVDRGLGSVEKISRSYVSQNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRLDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSFEGQYALIIVGRGGGGRVNSVLTFGMNDWQQCPELGPIGDVLSGSEFSVRTSVLIIQQHNLKGELDGLDDDFSIM 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45419195 45423531 + Lag0002763.1 Lac4g2643 606175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2643 792 Gene3D - 443 744 - -
Lac4g2643 792 FunFam Cation/H(+) antiporter 28 30 429 - -
Lac4g2643 792 Gene3D - 29 429 IPR038770 -
Lac4g2643 792 PANTHER CATION/H + ANTIPORTER 36 777 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lac4g2643 792 Pfam Sodium/hydrogen exchanger family 49 419 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2643 K26731 - - csv:101211645 1404.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2643 Lac-Chr4:45419195 Lac9g0210 Lac-Chr9:3239579 3.70E-90 dispersed
Lac4g2643 Lac-Chr4:45419195 Lac9g2349 Lac-Chr9:42755250 1.20E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g0210 . 5 821 Antiporter Super Family AT2G13620 71.0 0.0e+00 1160.2
Lac1g2021 . 75 834 Antiporter Super Family AT3G53720 68.8 2.0e-290 995.7
Lac1g2053 . 76 787 Antiporter Super Family AT3G53720 59.6 1.4e-232 803.5
Lac5g2191 . 83 780 Antiporter Super Family AT3G53720 51.1 1.6e-186 650.6
Lac5g2193 . 94 793 Antiporter Super Family AT3G53720 50.2 6.1e-183 638.6
Lac1g2011 . 54 492 Antiporter Super Family AT3G53720 60.1 3.9e-137 486.5
Lac5g2191 . 1 780 Antiporter Super Family AT5G41610 69.7 6.9e-310 1060.4
Lac5g2192 . 1 774 Antiporter Super Family AT5G41610 69.2 1.1e-302 1036.6
Lac5g2193 . 13 804 Antiporter Super Family AT5G41610 66.9 6.4e-300 1027.3
Lac1g2021 . 8 812 Antiporter Super Family AT5G41610 52.0 2.3e-212 736.5
Lac5g2192 . 1 794 Antiporter Super Family AT4G23700 66.3 4.4e-296 1014.6
Lac5g2193 . 21 794 Antiporter Super Family AT4G23700 65.3 6.3e-287 984.2
Lac5g2191 . 9 796 Antiporter Super Family AT4G23700 62.5 2.4e-278 955.7
Lac5g2193 . 11 794 Antiporter Super Family AT3G17630 64.2 3.8e-276 948.3
Lac5g2192 . 2 772 Antiporter Super Family AT3G17630 64.7 1.2e-274 943.3
Lac5g2191 . 3 779 Antiporter Super Family AT3G17630 62.7 4.8e-271 931.4
Lac1g2021 . 2 816 Antiporter Super Family AT3G17630 51.7 1.2e-210 730.7
Lac1g2053 . 8 785 Antiporter Super Family AT3G17630 50.1 2.8e-186 649.8
Lac5g2192 . 11 777 Antiporter Super Family AT1G64170 59.4 2.3e-244 842.8
Lac5g2193 . 19 802 Antiporter Super Family AT1G64170 57.0 9.8e-240 827.4
Lac5g2191 . 1 784 Antiporter Super Family AT1G64170 56.1 4.4e-232 802.0
Lac9g0210 . 5 821 Antiporter Super Family AT2G13620 71.0 0.0e+00 1160.2
Lac5g2192 . 11 777 Antiporter Super Family AT1G64170 59.4 2.3e-244 842.8
Lac5g2193 . 19 802 Antiporter Super Family AT1G64170 57.0 9.8e-240 827.4
Lac5g2191 . 1 784 Antiporter Super Family AT1G64170 56.1 4.4e-232 802.0
Lac5g2192 . 1 794 Antiporter Super Family AT4G23700 66.3 4.4e-296 1014.6
Lac5g2193 . 21 794 Antiporter Super Family AT4G23700 65.3 6.3e-287 984.2
Lac5g2191 . 9 796 Antiporter Super Family AT4G23700 62.5 2.4e-278 955.7
Lac5g2191 . 1 780 Antiporter Super Family AT5G41610 69.7 6.9e-310 1060.4
Lac5g2192 . 1 774 Antiporter Super Family AT5G41610 69.2 1.1e-302 1036.6
Lac5g2193 . 13 804 Antiporter Super Family AT5G41610 66.9 6.4e-300 1027.3
Lac1g2021 . 8 812 Antiporter Super Family AT5G41610 52.0 2.3e-212 736.5
Lac5g2193 . 11 794 Antiporter Super Family AT3G17630 64.2 3.8e-276 948.3
Lac5g2192 . 2 772 Antiporter Super Family AT3G17630 64.7 1.2e-274 943.3
Lac5g2191 . 3 779 Antiporter Super Family AT3G17630 62.7 4.8e-271 931.4
Lac1g2021 . 2 816 Antiporter Super Family AT3G17630 51.7 1.2e-210 730.7
Lac1g2053 . 8 785 Antiporter Super Family AT3G17630 50.1 2.8e-186 649.8
Lac1g2021 . 75 834 Antiporter Super Family AT3G53720 68.8 2.0e-290 995.7
Lac1g2053 . 76 787 Antiporter Super Family AT3G53720 59.6 1.4e-232 803.5
Lac5g2191 . 83 780 Antiporter Super Family AT3G53720 51.1 1.6e-186 650.6
Lac5g2193 . 94 793 Antiporter Super Family AT3G53720 50.2 6.1e-183 638.6
Lac1g2011 . 54 492 Antiporter Super Family AT3G53720 60.1 3.9e-137 486.5
Lac4g2643 . 47 792 Antiporter Super Family AT3G52080 55.6 4.1e-238 822.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34