Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2655 ATGGAAACTGGAGAGTCTGTGGCAAAGGTTATAAAGAACATGGGCCCCAACGCATGTCAAATCTGTGGAGACAATGTCGGGAAGACCGTCGATGGAGAACCGTTTGTTGCCTGCAATGTTTGCACGTTTCCTGTTTGCAGACCATGTTATGAGTACGAGAGAAAAGATGGGAATCAGTCTTGCCCTCAATGCAAAAGCAGATACAAGAGACACAAAGGAAGTCCTGCTGTTCTAGGTGATGAGGGGGATGTTGAGCTTGATGATGATGATGATGCCATTGATTTAAATTACATTTCTGAAAGTCAAAAACAGAAGCAAAAGATCACGGAGCGCATGATGAGCTGGCAGATGGCATATGGACAAGCACAAGATCTCCCACCTCCAAATTACGACAAAGAAGTTTCTTTTAATCACATTCCTTTGCTCACCAATGGGCAGGAGGTTTCTGGAGAACTTTCAGCTGCATCACCCGAGCATCATTCGATGGCATCTCCAGGACATCCTCGTGGAAAGCCAATATATTCTCTTCCTTATTCAGCTGATATTAACCAATCACCTAATGTGCGAGGTGTGGACCCGACAAAAGAGTATAATTCATCAGGGCTAGGCAATGTAGCTTGGAAAGAGAGAGTTGATGGCTGGAAGATGAAACAGGAGAAGAATGCTGTACCAATGAGCACAGCCCATGCTGCATCTGAAAGGGGAGGTGGAGATATTGATGCCTGTACAGATGTGCTTGTTGATGACTCCTTACTAAATGACGAAGCTCGCCAGCCTCTCTCAAGAAAGGTTTCTATTCCATCATCCAGGATAAACCCTTACCGAATGGTGATTGTTCTGCGGCTTGTGATTCTTTGTTTTTTCTTGCACTACCGGATAACAAATCCAGTACGCAATGCATACGCTCTATGGCTGATATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTGGATCAGTTCCCAAAGTGGCTTCCTGTAAACCGTGAGACATATCTCGATCGACTTGCATTAAGATATGATAGGGAAGGAGAGCCATCACAGCTTGCTGCTGTTGACATTTTTGTGAGTACAGTTGACCCACTGAAGGAGCCTCCACTCGTCACAGCCAACACCGTGCTATCTATTCTCGCTGTTGACTACCCAGTTGACAAGGTCTCGTGCTATGTCTCTGATGATGGAGCTGCCATGTTGACATTCGAAGCATTATCCGAGACATCAGAGTTTGCAAGGTCGTGGGTGCCTTTCTGCAAGAAATACAGCATTGAGCCTCGGGCTCCAGAATGGTACTTTGCTCAGAAAATTGATTACTTGAAGGATAAAGTCCATCCATCATTTGTCAAAGATCGAAGAGCGATGAAGAGAGAATACGAGGAATTTAAGGTTCGCATCAACGGTCTGGTATCAAAGGCACAGAAGGTTCCCGAAGAAGGATGGATCATGCAAGATGGAACTCCGTGGCCTGGAAATAATACTAGAGACCATCCGGGAATGATCCAGGTTTTCTTAGGCCAAAATGGTGGACTGGATTCCGAAGGTAACGAGTTGCCTCGTTTAGTCTATGTATCTCGTGAAAAGCGTCCAGGATTCCAACATCATAAGAAAGCCGGTGCAATGAATGCTCTTGTTCGAGTGTCTGCTGTCCTTACTAATGGCCCGTTCTTGTTAAATCTTGACTGTGATCATTACATAAACAATAGCAAGGCATTGAGAGAAGCTATGTGTTTCATGATGGATCCAAACCTTGGAAAATACGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATAGGAATGATCGATATGCTAATCGTAATACTGTTTTCTTTGATATAAATTTAAGAGGTTTAGATGGCCTTCAAGGTCCAGTTTATGTGGGTACTGGATGTGTCTTCAACAGAACTGCACTGTATGGTTATGAACCTCCTCACAAACCTAAGCATCGGAAACCAGGGTTTCTTTCATCGCTCTGTGGCGGTTCTCGAAAGAAGAGTTCAAAATCAAGTAAAAAGAGTCCCGACAAGAAAAAATCAAGCAAGCATGTGGACCCGACTGTGCCGATTTTCAATCTCGATGACATTGAAGAAGTGGTTGAAGGTGCTGGATATGATGATGAGAAGTCACTGCTAATGTCGCAAATGACCCTGGAGCAACGGTTTGGCCAGTCTGCTGTTTTTGTTGCCTCAACCCTTATGGAAAACGGCGGCGTTCCTCAATCCGCAACACCTGAGTCTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGTGGATATGAAGACAAAACTGACTGGGGATCTGAGATTGGATGGATCTATGGCTCTGTCACTGAAGATATTCTTACAGGATTCAAAATGCATGCCCGTGGTTGGCGATCGATTTATTGCATGCCAAAGCGTCCCGCCTTTAAAGGGTCTGCACCTATTAATCTTTCAGATCGATTGAACCAAGTGCTTCGATGGGCCCTCGGTTCTGTGGAGATTCTTCTGAGTAGGCATTGCCCTATCTGGTATGGCTATGGCGGAAGGCTCAAATGGCTCGAAAGGTTCGCATATGTGAACACTACAATCTATCCAATCACTGCTGTTCCTCTTCTCATGTATTGTACCTTACCAGCGGTGTGCCTGCTGACGAACAAGTTCATCATTCCCCAGATTAGTAACATTGCAAGTATATGGTTTATAGCCCTCTTCCTCTCCATTTTCGCGACTGGAATTCTCGAGATGAGATGGAGCGGGGTTGGAATCGATGAGTGGTGGAGAAACGAACAATTTTGGGTCATTGGTGGCGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTCTGCTCAAGGTTCTTGCTGGAATCGACACCAACTTCACGGTCACGTCAAAGGCATCAGATGAAGACGGGGACTTTGCCGAGCTTTACATGTTCAAATGGACGACTCTTCTCATCCCACCAACAACACTCCTCATAGTAAACTTGGTCGGAGTCGTAGCAGGGATATCTTATGCAATCAACAGCGGATACCAATCATGGGGACCACTGTTTGGCAAGCTATTCTTCGCCTTTTGGGTGATCATTCATCTCTATCCTTTCCTGAAAGGTTTGATGGGTCGCCAAAACAGAACGCCCACCATCGTCGTCGTATGGTCGATTCTGCTTGCTTCCATCTTCTCATTGTTATGGGTGAGGATCGATCCGTTCACTACAACAGTCACAGGTCCCGACGTCGAGGAGTGTGGAATCAACTGCTAG 3249 45.21 METGESVAKVIKNMGPNACQICGDNVGKTVDGEPFVACNVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDEGDVELDDDDDAIDLNYISESQKQKQKITERMMSWQMAYGQAQDLPPPNYDKEVSFNHIPLLTNGQEVSGELSAASPEHHSMASPGHPRGKPIYSLPYSADINQSPNVRGVDPTKEYNSSGLGNVAWKERVDGWKMKQEKNAVPMSTAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCFFLHYRITNPVRNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVSKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPHKPKHRKPGFLSSLCGGSRKKSSKSSKKSPDKKKSSKHVDPTVPIFNLDDIEEVVEGAGYDDEKSLLMSQMTLEQRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQISNIASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTTVTGPDVEECGINC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45532891 45538468 + Lag0002775.1 Lac4g2655 606187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2655 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Lac4g2655 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 261 1051 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lac4g2655 1082 SUPERFAMILY RING/U-box 6 89 - -
Lac4g2655 1082 Pfam Cellulose synthase 354 1075 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lac4g2655 1082 CDD mRING-HC-C4C4_CesA 19 67 - -
Lac4g2655 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 492 645 IPR029044 -
Lac4g2655 1082 Pfam Zinc-binding RING-finger 10 83 IPR027934 -
Lac4g2655 1082 FunFam Cellulose synthase 471 645 - -
Lac4g2655 1082 MobiDBLite consensus disorder prediction 647 688 - -
Lac4g2655 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 368 904 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0618 Lac-Chr2:4644374 Lac4g2655 Lac-Chr4:45532891 0.00E+00 dispersed
Lac2g2618 Lac-Chr2:39985040 Lac4g2655 Lac-Chr4:45532891 0.00E+00 dispersed
Lac3g0229 Lac-Chr3:1609822 Lac4g2655 Lac-Chr4:45532891 0.00E+00 dispersed
Lac4g2074 Lac-Chr4:40429848 Lac4g2655 Lac-Chr4:45532891 0.00E+00 dispersed
Lac4g2655 Lac-Chr4:45532891 Lac5g1782 Lac-Chr5:35513108 5.80E-248 dispersed
Lac4g2655 Lac-Chr4:45532891 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2655 K10999 - csv:101206590 2116.27