Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2662 ATGACAGACCCTAATTACTCCAATTTCTTCTCTCCCAATTCCTTCACCTTCATCCCTCTTCCTCCTTCCCCTTCCAATTTCCCCACCTCCCAATGCCGCCCTTCGCCGCCCTCCTCTCCGCCGCAGGCCCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCACCGATAATCACCCGGCCTCCTCCTCCACCACCCCAGATGACGAAACTACCCTCGCCCTCGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTCGACTACTCCCGCTCCTTCTCCCCGGACCCCGCCGGAAAAATCCTAGACGGCGACCTCTCCGGCCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCACATGTGGGGGCATGGTTCTCAATACAGAAAAGGACCAGAGTCCCTAAAAGGAACACAGCCGACCGCAATGCTACGGTTGCCGTGCTACTGTTGCGCGCCCGGGTGCAAACACAACATCGATAACCCGAGGTCGAGGCCGCTCAAGGACTTTCGCACCCTCCAAACACATTACAAGCGAAAGCACGGCATCAAGCCCTTCACATGTAGAAAATGCAGCAAGGCCTTCGCCGTGAAAGGCGATTGGCGAACGCACGAGAAGAATTGCGGGAAGATTTGGTATTGTTTTTGTGGCTCTGACTTCAAACACAAGCGCTCGCTCAAGGACCACATCAAGGCCTTCGGGCGTGGCCATGGCGCCCTTGGCCTCGACTACTTTGAGGACGAAAACGAACCTGCATCTGAAGTTGAACACGAAGGCGTCGTCATCCATTGA 882 55.44 MTDPNYSNFFSPNSFTFIPLPPSPSNFPTSQCRPSPPSSPPQALPLLNTLSPETTDNHPASSSTTPDDETTLALDFSLSCPSSDLDYSRSFSPDPAGKILDGDLSGHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDENEPASEVEHEGVVIH 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45626190 45628511 + Lag0002782.1 Lac4g2662 606194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2662 293 Gene3D Classic Zinc Finger 131 154 - -
Lac4g2662 293 PANTHER ZINC FINGER PROTEIN WIP2 114 288 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Lac4g2662 293 Gene3D Classic Zinc Finger 194 266 - -
Lac4g2662 293 MobiDBLite consensus disorder prediction 20 69 - -
Lac4g2662 293 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Lac4g2662 293 SUPERFAMILY beta-beta-alpha zinc fingers 199 236 IPR036236 -
Lac4g2662 293 MobiDBLite consensus disorder prediction 44 69 - -
Lac4g2662 293 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 215 239 - -
Lac4g2662 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Lac4g2662 293 MobiDBLite consensus disorder prediction 20 43 - -
Lac4g2662 293 SMART c2h2final6 216 236 IPR013087 -
Lac4g2662 293 SMART c2h2final6 132 154 IPR013087 -
Lac4g2662 293 FunFam Zinc finger protein WIP2 185 267 - -
Lac4g2662 293 SUPERFAMILY beta-beta-alpha zinc fingers 125 154 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2662 Lac-Chr4:45626190 Lac8g1295 Lac-Chr8:28218300 7.20E-84 dispersed
Lac10g2530 Lac-Chr10:39175847 Lac4g2662 Lac-Chr4:45626190 2.80E-89 wgd
Lac4g2662 Lac-Chr4:45626190 Lac9g2839 Lac-Chr9:46386195 2.00E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23763 PF00096 zf-C2H2 0.0015 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2662 - - - 0.0