Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2689 ATGGAGCTTGGCCTGAGCTTAGGCGACGCCCCCAAGCCCTTCCGTTTCGTCGACAAGCAACCGCAACCACCACCGCCGCAGCGCGGTCTTTCCCATCCAGATTTAGGGTTCTGCGTCGACCTATCGATCGGCCGTCCGGTCGCCGGAGAGAAAGTAGACGACGAAGAAAAACCTAATCAGAGAGAAGACGAATCCGACGGAAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCACAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAGGGCGAAGACCGAGCCGCATCGCCGAACAGCGCTGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGCGGCGGAGGGAACATTTCTTGCCGGAGAGATCAAATGGAAAATGGCGTAATGAACGAAGTGGGCGAATCTGAGAGAGCGTCATCACGAGCGAGCGATGAAGACGAAAATGGCTCAACGAGGAAGAAACTCAGACTCTCAAAAGAACAATCCGCTTTCCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAACCCTAAGCAGAAACTAGCACTGGCCAAGCAATTGAATCTTCGTCCTCGCCAAGTGGAAGTCTGGTTTCAAAACAGAAGAGCCAGGACTAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAAGCACGAACTCATTCTACATGCAATTACCAGCCACAACACTGACCATGTGCCCGTCTTGTGAAAGAGTGACCTCAACGTCGGCCTCCACCGGCAGCGCCACCGCAGGCGGAGGAAAATCGACGGAGGCGGTTACAAAACGATCTGGGTTGGCCATTGCAGGGCGAGGCAGTTCATCCTCTTTCCCATTTTCTTCTGCAAAAACTCAGTCCCACCAGTCAACAGCTTCATGA 999 51.15 MELGLSLGDAPKPFRFVDKQPQPPPPQRGLSHPDLGFCVDLSIGRPVAGEKVDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRAASPNSAASSFQMEFGLYGGGGNISCRRDQMENGVMNEVGESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKSTNSFYMQLPATTLTMCPSCERVTSTSASTGSATAGGGKSTEAVTKRSGLAIAGRGSSSSFPFSSAKTQSHQSTAS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45861947 45863199 - Lag0002809.1 Lac4g2689 606221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2689 332 FunFam Homeobox-leucine zipper protein 18 150 227 - -
Lac4g2689 332 MobiDBLite consensus disorder prediction 47 68 - -
Lac4g2689 332 Gene3D - 170 220 - -
Lac4g2689 332 MobiDBLite consensus disorder prediction 145 169 - -
Lac4g2689 332 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g2689 332 MobiDBLite consensus disorder prediction 151 169 - -
Lac4g2689 332 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g2689 332 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac4g2689 332 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Lac4g2689 332 SUPERFAMILY Homeodomain-like 158 223 IPR009057 -
Lac4g2689 332 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 58 291 IPR050762 -
Lac4g2689 332 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
Lac4g2689 332 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Lac4g2689 332 MobiDBLite consensus disorder prediction 283 332 - -
Lac4g2689 332 MobiDBLite consensus disorder prediction 308 332 - -
Lac4g2689 332 Coils Coil 228 258 - -
Lac4g2689 332 MobiDBLite consensus disorder prediction 1 114 - -
Lac4g2689 332 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Lac4g2689 332 MobiDBLite consensus disorder prediction 283 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2717 Lac-Chr1:48403763 Lac4g2689 Lac-Chr4:45861947 2.70E-56 dispersed
Lac3g0372 Lac-Chr3:2793190 Lac4g2689 Lac-Chr4:45861947 1.80E-40 dispersed
Lac4g2689 Lac-Chr4:45861947 Lac5g1885 Lac-Chr5:37163796 1.50E-53 dispersed
Lac10g2648 Lac-Chr10:40645162 Lac4g2689 Lac-Chr4:45861947 3.10E-76 transposed
Lac7g0087 Lac-Chr7:738420 Lac4g2689 Lac-Chr4:45861947 3.30E-49 transposed
Lac11g0555 Lac-Chr11:5674788 Lac4g2689 Lac-Chr4:45861947 1.50E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23767 PF00046 Homeodomain 2.30E-15 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2689 K09338 - csv:101221600 540.036