Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2710 ATGGCCGTTGAAACAAACCAAACAAACGAATTCATTTTCCGTTCCAAGCTCCCCGACATTCACATTCCCAATCATCTCCCACTCCACGAATACGTTTTTCAGAACAACGCCAAATTCGGCTCACGCCCATGTTTGATCAACGCCGCCACCGCCCACGTCTACTCCTACGACGACGTTCAGTTAACGTCCCGTCGAGTCGCCAGTGGCCTCCACACCCTCGGCATTAAGAAGGCCGACGTCATCATGAATTTGCTTCCCAACTCGCCGGAGTTCGTCTTCACCTTCCTCGCCGCCTCCTACCGCGGCGCCATCATGACGGCCGCCAACCCGTTTTGCACGGCGGTGGAAATCGCCAAACAGGCCAAAGCCGCCAATGCGAAATTGATCGTCACGATGGCTTGCTTTTACGATAAGGTCAAGGATTTGGCTGAAGATGGGGTCAAAATCGTGTGTGTTGATTTGGCCGTTGAGGGTTGTTTGCATTTTTCTGTTTTGAGTGGGGCGGATGAATCCCACGCGCCGCCGGTGGAGATCGACGCTGAGGATGTGGTGGCGCTGCCGTACTCCTCCGGCACCACAGGCCTGCCGAAGGGTGTTATGTTGACTCACAAAGGGCTGATCACAAGCGTGGCTCAACAAATCGACGGCCACAATCCGAACCTGTATTACGACCGCGATGACGTCGTCCTCTGTGTGTTGCCGCTTTTTCATATTTATTCACTGAATTCGATTTTGCTGTGTGGGCTACGCGCCGGCGCTGCGATTCTGATAATGCAGAAATTCGAGATCGTTTCGCTTTTGCAATTGGTTGAGAAATACAAAGTTTCGATCATGCTGATCGTGCCGCCGATTCTTTTGGCGATTGCTAAGTCGCCGGAGTTTGAGAAATACGACGTGTCGTCGGTGAGGGTTCTGAAATCCGGCGGTGCGCCGCTGGGGAAGGAGCTGGAGAACGCTGTAAGGGCGAAATTTCCGTCGGCAGTTCTCGGGCAGGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGACCATGAGTTTGGGTTTTGCGAAAGAACCGTTTCCAGTGAAAGCCGGAGCGTGTGGGACGGTGGTGAGAAATGCTGAGATGAAGATTGTTGACCCGGAAACCGGCGCCTCGTTGCCGGCGAATTCCTCCGGAGAGATTTGTATCAGAGGGGATCAGATCATGAAGGGGTATTTGAATGATTTGGAGTCAACGAAGAGGACTATTGATAAAGAAGGATGGCTTCATACCGGCGATATCGGTTTCGTGGACGACGACGACGAGCTTTTCATTGTGGATCGGCTGAAGGAACTGATCAAATTCAAGGCATTTCAGGTGGCGCCGGCGGAGCTGGAGGCCCTTCTTATCACTCACCCAAAACTTTCCGATGCTGCAGTTATTGGTAAGCCGGACGAGCATGCCGGAGAAGTGCCGGTGGCGTTTGTAGTGAAGGCAGACGGCGACGCAATCGCTGAAGAAGATATAAAGCAATTCATATCAAAACAAGTGGTGTTCTATAAAAGACTAAACCGAGTGTTTTTTGTCAATACCATTCCAAAGGCACCATCTGGCAAAATCCTTAGAAAAGAGCTAAGAGCAAAATTGGCTTCTGGTGCTTACAATTAA 1629 51.69 MAVETNQTNEFIFRSKLPDIHIPNHLPLHEYVFQNNAKFGSRPCLINAATAHVYSYDDVQLTSRRVASGLHTLGIKKADVIMNLLPNSPEFVFTFLAASYRGAIMTAANPFCTAVEIAKQAKAANAKLIVTMACFYDKVKDLAEDGVKIVCVDLAVEGCLHFSVLSGADESHAPPVEIDAEDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGHNPNLYYDRDDVVLCVLPLFHIYSLNSILLCGLRAGAAILIMQKFEIVSLLQLVEKYKVSIMLIVPPILLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELENAVRAKFPSAVLGQGYGMTEAGPVLTMSLGFAKEPFPVKAGACGTVVRNAEMKIVDPETGASLPANSSGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFVDDDDELFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGKPDEHAGEVPVAFVVKADGDAIAEEDIKQFISKQVVFYKRLNRVFFVNTIPKAPSGKILRKELRAKLASGAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46053276 46054990 - Lag0002830.1 Lac4g2710 606242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2710 542 SUPERFAMILY Acetyl-CoA synthetase-like 10 538 - -
Lac4g2710 542 CDD 4CL 22 532 - -
Lac4g2710 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Lac4g2710 542 Gene3D - 3 436 IPR042099 -
Lac4g2710 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Lac4g2710 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Lac4g2710 542 Pfam AMP-binding enzyme 34 400 IPR000873 -
Lac4g2710 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Lac4g2710 542 Gene3D - 437 538 IPR045851 -
Lac4g2710 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0042 Lac-Chr13:318236 Lac4g2710 Lac-Chr4:46053276 1.90E-109 dispersed
Lac1g3590 Lac-Chr1:55133614 Lac4g2710 Lac-Chr4:46053276 6.50E-24 dispersed
Lac3g0310 Lac-Chr3:2202850 Lac4g2710 Lac-Chr4:46053276 2.10E-201 dispersed
Lac4g2710 Lac-Chr4:46053276 Lac9g1420 Lac-Chr9:32082077 1.20E-180 dispersed
Lac4g2710 Lac-Chr4:46053276 Lac4g2711 Lac-Chr4:46070636 2.40E-290 tandem
Lac11g0573 Lac-Chr11:5816331 Lac4g2710 Lac-Chr4:46053276 6.20E-230 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2710 K01904 - csv:101218361 947.962