Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2723 ATGGCGAAGATCTCACATCCACCGCACAAGAATTCCATTTCCTCCACTTCTGATCCTCACTCCTCTCCAATCCATCAGAGGAAGCCTCTCAAGCGCACGCGTAAGTCCGTTCCTCGAGATGCTCCCGCTCAGCGCAGCTCTGTATACCGCGGAGTCACCAGGCATAGATGGACTGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAACGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTAGCGGCGCTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCACTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCAAAATATAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATATCTTTACCTTGGAACATACGCTACCCAAGAAGAAGCTGCCACGGCTTACGACATGGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACGAATTTCGATCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACGGAACATTCCAAACAATGACCGTCCACCAAGCCCTAACGCCGGCGAAACTACCTCCGAATTTGACCCCAAATCCCCCCTCGGATTCACCTGTCCATCGCAATGTTCGAACTCCGGCCAACCCGCCACCGCGCCACTGCCGGAACCTGGCGGTGAAGACTCCTCGTCGTCGTCGGCGGCGCTGGAGCTGCTACTCCATTCGTCAAAGTTCAAAAACATACTAGAAAGGACATCCACCGCCGAGGCTCCACAGACACCACCGGAATCCGACCGGCCGCGCCGATGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCCCCAAGATTCCAGCGACATTGCCGGAAGCGACGACGGCCTTTTCGGGTATCTAAATTCGTTTTTTCCTTCATCAGTTTTTCACTGCGAACTCGATGCTTAA 1074 51.12 MAKISHPPHKNSISSTSDPHSSPIHQRKPLKRTRKSVPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGTETVLNFPLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKCLRPGERNIPNNDRPPSPNAGETTSEFDPKSPLGFTCPSQCSNSGQPATAPLPEPGGEDSSSSSAALELLLHSSKFKNILERTSTAEAPQTPPESDRPRRCIPDDIQTYFDCTPQDSSDIAGSDDGLFGYLNSFFPSSVFHCELDA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46172242 46176761 + Lag0002843.1 Lac4g2723 606255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2723 357 Pfam AP2 domain 146 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 FunFam AP2-like ethylene-responsive transcription factor 47 113 - -
Lac4g2723 357 CDD AP2 146 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 MobiDBLite consensus disorder prediction 215 275 - -
Lac4g2723 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 232 - -
Lac4g2723 357 Gene3D AP2/ERF domain 48 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 MobiDBLite consensus disorder prediction 223 260 - -
Lac4g2723 357 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 MobiDBLite consensus disorder prediction 8 23 - -
Lac4g2723 357 SMART rav1_2 48 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 SMART rav1_2 147 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
Lac4g2723 357 MobiDBLite consensus disorder prediction 1 49 - -
Lac4g2723 357 SUPERFAMILY DNA-binding domain 47 112 IPR016177 GO:0003677(InterPro)
Lac4g2723 357 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 MobiDBLite consensus disorder prediction 292 312 - -
Lac4g2723 357 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2723 357 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0572 Lac-Chr13:4237099 Lac4g2723 Lac-Chr4:46172242 1.90E-77 dispersed
Lac3g0242 Lac-Chr3:1715191 Lac4g2723 Lac-Chr4:46172242 2.50E-115 dispersed
Lac4g2723 Lac-Chr4:46172242 Lac6g0038 Lac-Chr6:352507 1.80E-76 dispersed
Lac4g2723 Lac-Chr4:46172242 Lac8g0535 Lac-Chr8:7699221 2.40E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23769 PF00847 AP2 2.90E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2723 K09285 - csv:101206499 583.178