Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2724 ATGATCGGCGACAAGAAAACGATCATACCTCGCCAAGCTTCCTATAATTCTCTGTACGTGAATCCCCTCAACGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGGCGGCTGGCCGGCTGCGGCGACGCCCTCGACGGCGGATTCCGGCAAGGTAAAGAAAACTTGACGCCCAATACGAAGGATAAACAGAGCGATGAAAATGGAGTGTTATGCGACAAAGAAAATGCGATTCCCAATAATGGGTCTTGTGCGAATCCGAAGAAATTTGGAGATTTGAAGTCATTTTCGAGTGGGAAGGCTTTGAAGCCTTCGTCTCTTCATCTCTGTATGCAGATGAATGAGCCCGATAAGGTTTTTGCCTCTAGATTATGGGATGGTACTGACTCGGAACATTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCTACATTGCCAAACAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACATGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGTGCTTTCTATTCTCTATACACCAATGAAGGGAAGGGACGGCAGGATCGGAAGTTGGCAGTAGCTCGCCATCGACGACGAAACGGGAGGTCGGAGTATAAGATAGCTCAGAGTGCAAGAGGGATATTGTACAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAGTATCATATATGGGATCAGGGGAGCCGTCTGAAATCGATCCCAAGCCGGTCGAAATCGCTTCTGGCTGCTGTAACGTTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATTCCCAAGCATCAATCAATGCAGCTGAAGAACACCAATCAGGTGCAACACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAGAGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAATCCTCTGTGAAGAATTTCCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGAAAGTCTAAGTATGTTATGGATTACAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCCAAGCTTTGTTGCTCAGTTTGA 1251 46.68 MIGDKKTIIPRQASYNSLYVNPLNDLRHNRSCSDGGRLAGCGDALDGGFRQGKENLTPNTKDKQSDENGVLCDKENAIPNNGSCANPKKFGDLKSFSSGKALKPSSLHLCMQMNEPDKVFASRLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILYNADDSFVGSMTTNLVGSKYHIWDQGSRLKSIPSRSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKAKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQSSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46178476 46181487 - Lag0002844.1 Lac4g2724 606256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2724 416 Pfam Tub family 161 410 IPR000007 -
Lac4g2724 416 Gene3D Tubby Protein; Chain A 154 415 IPR025659 -
Lac4g2724 416 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Lac4g2724 416 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Lac4g2724 416 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Lac4g2724 416 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Lac4g2724 416 PANTHER TUBBY-RELATED 134 414 - -
Lac4g2724 416 SUPERFAMILY Tubby C-terminal domain-like 149 414 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2724 Lac-Chr4:46178476 Lac5g2398 Lac-Chr5:42678189 6.80E-11 dispersed
Lac4g2724 Lac-Chr4:46178476 Lac7g0837 Lac-Chr7:6759323 6.80E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23770 PF01167 Tub 1.30E-45 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2724 K19600 - csv:101216780 759.214