Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2724 ATGATCGGCGACAAGAAAACGATCATACCTCGCCAAGCTTCCTATAATTCTCTGTACGTGAATCCCCTCAACGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGGCGGCTGGCCGGCTGCGGCGACGCCCTCGACGGCGGATTCCGGCAAGGTAAAGAAAACTTGACGCCCAATACGAAGGATAAACAGAGCGATGAAAATGGAGTGTTATGCGACAAAGAAAATGCGATTCCCAATAATGGGTCTTGTGCGAATCCGAAGAAATTTGGAGATTTGAAGTCATTTTCGAGTGGGAAGGCTTTGAAGCCTTCGTCTCTTCATCTCTGTATGCAGATGAATGAGCCCGATAAGGTTTTTGCCTCTAGATTATGGGATGGTACTGACTCGGAACATTCGAGTTCGTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCTACATTGCCAAACAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACATGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGTGCTTTCTATTCTCTATACACCAATGAAGGGAAGGGACGGCAGGATCGGAAGTTGGCAGTAGCTCGCCATCGACGACGAAACGGGAGGTCGGAGTATAAGATAGCTCAGAGTGCAAGAGGGATATTGTACAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAGTATCATATATGGGATCAGGGGAGCCGTCTGAAATCGATCCCAAGCCGGTCGAAATCGCTTCTGGCTGCTGTAACGTTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATTCCCAAGCATCAATCAATGCAGCTGAAGAACACCAATCAGGTGCAACACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAGAGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAATCCTCTGTGAAGAATTTCCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGAAAGTCTAAGTATGTTATGGATTACAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCCAAGCTTTGTTGCTCAGTTTGA 1251 46.68 MIGDKKTIIPRQASYNSLYVNPLNDLRHNRSCSDGGRLAGCGDALDGGFRQGKENLTPNTKDKQSDENGVLCDKENAIPNNGSCANPKKFGDLKSFSSGKALKPSSLHLCMQMNEPDKVFASRLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILYNADDSFVGSMTTNLVGSKYHIWDQGSRLKSIPSRSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKAKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLMIQSSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46178476 46181487 - Lag0002844.1 Lac4g2724 606256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2724 416 Pfam Tub family 161 410 IPR000007 -
Lac4g2724 416 Gene3D Tubby Protein; Chain A 154 415 IPR025659 -
Lac4g2724 416 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Lac4g2724 416 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Lac4g2724 416 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Lac4g2724 416 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Lac4g2724 416 PANTHER TUBBY-RELATED 134 414 - -
Lac4g2724 416 SUPERFAMILY Tubby C-terminal domain-like 149 414 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2724 K19600 - - csv:101216780 759.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2724 Lac-Chr4:46178476 Lac5g2398 Lac-Chr5:42678189 6.80E-11 dispersed
Lac4g2724 Lac-Chr4:46178476 Lac7g0837 Lac-Chr7:6759323 6.80E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1686 . 1 430 TUB Transcription Factor Family AT1G76900 73.0 7.8e-178 620.9
Lac5g2537 . 1 428 TUB Transcription Factor Family AT1G76900 71.0 3.2e-171 599.0
Lac8g1678 . 1 432 TUB Transcription Factor Family AT1G76900 69.7 9.3e-171 597.4
Lac5g2113 . 1 401 TUB Transcription Factor Family AT1G76900 50.9 4.7e-114 409.1
Lac5g2537 . 174 428 TUB Transcription Factor Family AT1G25280 73.5 4.5e-101 365.2
Lac8g1678 . 175 432 TUB Transcription Factor Family AT1G25280 71.2 1.8e-94 343.2
Lac2g1686 . 173 430 TUB Transcription Factor Family AT1G25280 68.3 3.2e-94 342.4
Lac5g2113 . 165 401 TUB Transcription Factor Family AT1G25280 55.8 2.4e-70 263.1
Lac7g0837 . 154 397 TUB Transcription Factor Family AT1G25280 50.5 1.1e-67 254.2
Lac12g2379 . 154 400 TUB Transcription Factor Family AT1G25280 51.6 3.6e-66 249.2
Lac1g2922 . 176 412 TUB Transcription Factor Family AT1G25280 50.9 2.2e-63 240.0
Lac12g2379 . 98 400 TUB Transcription Factor Family AT5G18680 60.6 5.2e-98 355.1
Lac7g0837 . 98 397 TUB Transcription Factor Family AT5G18680 60.1 7.8e-94 341.3
Lac2g1686 . 112 430 TUB Transcription Factor Family AT5G18680 53.0 2.5e-84 309.7
Lac8g1678 . 112 432 TUB Transcription Factor Family AT5G18680 52.1 1.6e-83 307.0
Lac5g2537 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 3.1e-82 302.8
Lac5g2113 . 103 401 TUB Transcription Factor Family AT5G18680 53.0 7.1e-79 291.6
Lac5g2398 . 120 388 TUB Transcription Factor Family AT5G18680 50.2 1.1e-68 257.7
Lac5g2113 . 1 401 TUB Transcription Factor Family AT2G18280 61.9 3.3e-140 495.7
Lac1g2922 . 1 412 TUB Transcription Factor Family AT2G18280 61.9 3.1e-138 489.2
Lac5g2537 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 6.0e-118 421.8
Lac2g1686 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 7.4e-116 414.8
Lac8g1678 . 1 432 TUB Transcription Factor Family AT2G18280 51.8 1.2e-113 407.5
Lac7g0837 . 1 397 TUB Transcription Factor Family AT2G18280 52.0 2.0e-113 406.8
Lac12g2379 . 1 400 TUB Transcription Factor Family AT2G18280 52.0 1.0e-112 404.4
Lac5g2398 . 56 388 TUB Transcription Factor Family AT2G18280 51.4 1.1e-95 347.8
Lac12g2379 . 1 400 TUB Transcription Factor Family AT2G47900 66.9 5.6e-159 558.1
Lac7g0837 . 1 397 TUB Transcription Factor Family AT2G47900 67.1 1.4e-157 553.5
Lac2g1686 . 1 430 TUB Transcription Factor Family AT2G47900 56.1 6.2e-134 474.9
Lac5g2537 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.9e-132 467.6
Lac8g1678 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 8.4e-131 464.5
Lac5g2113 . 1 401 TUB Transcription Factor Family AT2G47900 56.6 4.2e-122 435.6
Lac1g2922 . 1 412 TUB Transcription Factor Family AT2G47900 53.1 6.9e-117 418.3
Lac5g2398 . 56 388 TUB Transcription Factor Family AT2G47900 52.6 7.4e-103 371.7
Lac4g2724 . 82 307 TUB Transcription Factor Family AT1G16070 60.9 2.3e-74 276.6
Lac2g1686 . 67 430 TUB Transcription Factor Family AT1G43640 71.3 1.0e-148 523.9
Lac5g2537 . 66 428 TUB Transcription Factor Family AT1G43640 68.5 7.4e-147 517.7
Lac8g1678 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 9.4e-142 500.7
Lac12g2379 . 47 400 TUB Transcription Factor Family AT1G43640 50.9 2.9e-106 382.9
Lac7g0837 . 49 397 TUB Transcription Factor Family AT1G43640 51.9 3.0e-103 372.9
Lac1g2922 . 33 412 TUB Transcription Factor Family AT1G47270 57.9 3.6e-123 439.1
Lac5g2113 . 22 401 TUB Transcription Factor Family AT1G47270 57.8 2.3e-122 436.4
Lac5g2537 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 7.3e-116 414.8
Lac2g1686 . 1 430 TUB Transcription Factor Family AT1G47270 50.6 4.4e-113 405.6
Lac8g1678 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 1.4e-111 400.6
Lac5g2398 . 1 388 TUB Transcription Factor Family AT1G53320 70.9 2.4e-156 549.3
Lac5g2113 . 8 401 TUB Transcription Factor Family AT1G53320 51.0 1.8e-103 373.6
Lac7g0837 . 98 397 TUB Transcription Factor Family AT3G06380 61.7 1.2e-94 344.0
Lac12g2379 . 98 400 TUB Transcription Factor Family AT3G06380 60.6 1.3e-93 340.5
Lac5g2537 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 3.0e-82 302.8
Lac8g1678 . 116 432 TUB Transcription Factor Family AT3G06380 53.0 5.6e-81 298.5
Lac2g1686 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 9.6e-81 297.7
Lac5g2113 . 107 401 TUB Transcription Factor Family AT3G06380 53.5 1.1e-79 294.3
Lac1g2922 . 118 412 TUB Transcription Factor Family AT3G06380 50.7 2.3e-74 276.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011488 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23770 PF01167 Tub 1.30E-45 CL0395 Lac TF