Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g2745 | ATGCCGTTCGACGGTTCTTCACCCTCCGCCCCCACCGTCTGCGTCACCGGCGCCGGCGGCTTCATTGCCTCATGGATCGTCAAACTCCTCCTCGAGAAAGGCTATACCGTAAGAGGAACCGTCAGAAATCCAGACGATCCGAAGAACGGCCATCTGAGAGAGCTCGAAGGCGCGGCGGAACGGCTCAGTTTGCATAGAGCTGATCTTCTCGATTTCGAGAGCCTCAAAGCGGCGATCAATGGCTGCGATGGCGTCTTCCACACGGCATCGCCTGTGACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTCAACGGCACGAAGAACGTTATAATCGCGGCGGCCGAAGCCAATGTCCGCCGCGTCGTGTTCACTTCATCGATTGGCGCAGTCTACATGGACCCCAACCGTGGTCTAGACGAGATCGTGGACGAGTCCTGTTGGAGCGATCTCGAGTTCTGCAAGAACACCAAGAACTGGTACTGCTACGGTAAAGCTGTGGCGGAGCAGGCGGCGTGGGAGGTTGCGAAGGAGAAGGGTGTGGACTTGGTGGTGGTGAATCCGGTGCTGGTGCTAGGGCCATTGCTGCAATCCACCATTAATGCGAGCATAATTCATATACTGAAATACTTGACTGGATCGGCGAAGACGTACGCCAATTCGGTTCAGGCGTATGTGCACGTGAAGGATGTGGCTCTAGCACATATTCTCGTGTACGAGAATCCCTCCGCCGCCGGCCGCTACCTCTGCGCCGAGAGTGTGCTCCACCGAGGAGAGATCGTTGAGATTCTGGCCAAGTTGTTCCCGGAATATCCTATTCCCACCAAGTGCTCAGATGAAGTGAACCCAAGGAAGAAGGCATACAACTTCTCCAACCAGAAGCTCAAGGACTTGGGATTGGAGTTCACACCAGTGAGGCAGTGTCTATACGACACCGTAAAGAGCCTGCAAGAGAAAGGTCATCTCCCAATTCCCACTTGTACTCAACGTCAACCAGCAGAGTCCATTCGAATTCAATCTTAA | 1023 | 54.74 | MPFDGSSPSAPTVCVTGAGGFIASWIVKLLLEKGYTVRGTVRNPDDPKNGHLRELEGAAERLSLHRADLLDFESLKAAINGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGLDEIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQSTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYENPSAAGRYLCAESVLHRGEIVEILAKLFPEYPIPTKCSDEVNPRKKAYNFSNQKLKDLGLEFTPVRQCLYDTVKSLQEKGHLPIPTCTQRQPAESIRIQS | 340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 46323593 | 46327918 | - | Lag0002865.1 | Lac4g2745 | 606277 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g2745 | 340 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 12 | 315 | IPR050425 | GO:0016616(PANTHER) | |
| Lac4g2745 | 340 | CDD | FR_SDR_e | 13 | 300 | - | - | |
| Lac4g2745 | 340 | Gene3D | - | 4 | 337 | - | - | |
| Lac4g2745 | 340 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 245 | IPR001509 | - | |
| Lac4g2745 | 340 | FunFam | Cinnamoyl-CoA reductase 1 | 4 | 335 | - | - | |
| Lac4g2745 | 340 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 11 | 317 | IPR036291 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g0605 | Lac-Chr11:6177867 | Lac4g2745 | Lac-Chr4:46323593 | 5.20E-147 | dispersed | |
| Lac11g0606 | Lac-Chr11:6193196 | Lac4g2745 | Lac-Chr4:46323593 | 7.70E-122 | dispersed | |
| Lac4g2745 | Lac-Chr4:46323593 | Lac9g2808 | Lac-Chr9:46174469 | 6.60E-81 | dispersed | |
| Lac13g0491 | Lac-Chr13:3594094 | Lac4g2745 | Lac-Chr4:46323593 | 9.10E-65 | transposed | |
| Lac1g2479 | Lac-Chr1:46230231 | Lac4g2745 | Lac-Chr4:46323593 | 3.00E-21 | transposed | |
| Lac2g0046 | Lac-Chr2:371556 | Lac4g2745 | Lac-Chr4:46323593 | 3.60E-60 | transposed | |
| Lac5g1614 | Lac-Chr5:32877936 | Lac4g2745 | Lac-Chr4:46323593 | 8.40E-39 | transposed | |
| Lac5g1814 | Lac-Chr5:36117689 | Lac4g2745 | Lac-Chr4:46323593 | 2.20E-65 | transposed | |
| Lac11g0604 | Lac-Chr11:6167817 | Lac4g2745 | Lac-Chr4:46323593 | 2.60E-29 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac4g2745 | K09753 | - | csv:101213412 | 609.757 |