Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2752 ATGGCCCGACCTCAGCAACGCTATCGCGGTGTTCGCCAACGTCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGTTAGGGACGTTCGAGACGGCGGAGGACGCAGCCCGAGCCTACGACGAGGCGGCACGGCTGATGTGCGGACCGAAAGCGCGAACCAACTTCCAATTCAATCCCAACGATCAACAGTCATCTTCTTCTTCCTCTTCCTCCAAGCTTCTCTCCGCCGCGCTGATTGCGAAATTACACAAATGCCATTTGGCCTCACTCCAAATTGCCAAAAAACACGTCCAGAAACAACACCTAGGATTCGACCCCAACTACGCCGCATACGGCGGCCCTCCGCCGAGCATTGCCGGAACCTCCACCGGCGGGTGGCTGCCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGGAGAGCAATAATATCAATAACAACAACAATATTCATCATCAGCAATGCCTTCAGCCTCTTGAAGATGATCATATCGAACAAATGATACAAGAGCTGCTACACCTCGGATCTTTCGAAATTGTTACATAA 573 51.83 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHVQKQHLGFDPNYAAYGGPPPSIAGTSTGGWLPEETWVYSDEAQMESNNINNNNNIHHQQCLQPLEDDHIEQMIQELLHLGSFEIVT 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46384071 46384840 + Lag0002872.1 Lac4g2752 606284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2752 190 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Lac4g2752 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2752 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2752 190 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2752 190 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Lac4g2752 190 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2752 190 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2752 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2752 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 126 IPR050913 -
Lac4g2752 190 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2752 Lac-Chr4:46384071 Lac6g0608 Lac-Chr6:5165481 3.40E-42 dispersed
Lac4g2752 Lac-Chr4:46384071 Lac4g2756 Lac-Chr4:46414456 4.20E-16 proximal
Lac11g0615 Lac-Chr11:6312121 Lac4g2752 Lac-Chr4:46384071 1.40E-37 wgd
Lac2g0562 Lac-Chr2:4252667 Lac4g2752 Lac-Chr4:46384071 1.70E-37 wgd
Lac4g2752 Lac-Chr4:46384071 Lac6g0607 Lac-Chr6:5159312 2.50E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23772 PF00847 AP2 8.00E-12 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2752 - - - 0.0