Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2753 ATGAATCTTCTTGGTATTTTACTTCCCATGTGGGTTTTCTATTCCTTGTTCTTAATAATTGATGCCAGACCAGAGCTTGCTGGGATTTCAATTTCTAGGACTGTTTTTGCTTCTCAGAGAGAACCCATTTCTCTCATTGTAACCAAAATGGAAGCTCAATCCCCAGGAGTTGCAGAGGTTAGAGTAGTTCACCACCAAGATTTGAACAAGAGAATTCTTATAGCATTGATTGTTTCTTCCACTCTCCTTGGAGCTATATTGCTGTCCCTTTTGTGTTTTTGGATATATCGTCGAAAAACGTCGAAGCTTGATGATGGAGAATGTCAAAAGAATTTGGAGGCATCGAAAGGGATGACAACAAATCCCATCATATCCAGATTTAACTCCTTGAGGTTGGCCAATTTTAAAGGTTCAGTTTCCACCATTGATTATAAGCTGTTGGAAGCAGCAACTGACAGCTTCAGCAAAAGCAATATTTTGGGTGAAGGCGGTACGGGGCATGTTTACAAAGCTCGCTTCAATGATAAAATGCTGGCAGCTGTGAAGAGAATAGACAATGGAGGAGCGGATGCCGAAAGAGAATTTGAGAATGAGGTGAGCTGGCTATGTAAAATACGACATCAAAATGTAATCAAGCTCTTGGGGCATTGCGTTCATGGCGAAACACGGTTTCTTGTTTACGAGATGATGCAGAATGGATCTTTGGAGTCTCAATTGCATGGACCTTCTCATGGATCGGCTTTAACATGGCATCTCCGAATGAAGATCGCTGTCGATGTTGCGAGAGGATTGGAATATCTTCACGAGCATCGAAATCCTCCTGTCGTTCACCGGGATTTGAAATCGTCGAATATCCTTCTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCTGGAACTTTGGGATACGTCGCCCCGGAGTACCTTTTAGACGGTAAACTAACAGATAAAAGCGACGTCTATGCATTCGGAGTCGTTCTTTTGGAGCTTCTGACCGGGAAAAAGCCTGTCGAGAAGATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCAATCCCGCAGCTTAGCGACCGATCAAAGCTACCGAAAATTGTCGATCCCGCGATCAGGGACACGATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCTGTGTTATGTGTACAATCAGAACCGAGCTATCGACCGTTAGTTACCGACGTTCTACATTCCCTCATTCCTCTCGTACCAGTAGAGCTTGGAGGGTCACTAAGAATAACCGAACCGCAGCATCCGAAAGTGCCTTCATCGACCTGCTAA 1353 43.75 MNLLGILLPMWVFYSLFLIIDARPELAGISISRTVFASQREPISLIVTKMEAQSPGVAEVRVVHHQDLNKRILIALIVSSTLLGAILLSLLCFWIYRRKTSKLDDGECQKNLEASKGMTTNPIISRFNSLRLANFKGSVSTIDYKLLEAATDSFSKSNILGEGGTGHVYKARFNDKMLAAVKRIDNGGADAEREFENEVSWLCKIRHQNVIKLLGHCVHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDVARGLEYLHEHRNPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPAIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPQHPKVPSSTC 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46390041 46392764 - Lag0002873.1 Lac4g2753 606285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2753 450 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Lac4g2753 450 SMART serkin_6 154 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2753 450 Gene3D Phosphorylase Kinase; domain 1 117 229 - -
Lac4g2753 450 Pfam Protein tyrosine and serine/threonine kinase 157 365 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2753 450 FunFam probable receptor-like protein kinase At1g80640 230 428 - -
Lac4g2753 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2753 450 PANTHER OS01G0750732 PROTEIN 65 427 IPR050885 -
Lac4g2753 450 Gene3D Transferase(Phosphotransferase) domain 1 230 428 - -
Lac4g2753 450 CDD STKc_IRAK 160 426 - -
Lac4g2753 450 ProSiteProfiles Protein kinase domain profile. 154 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2753 450 SUPERFAMILY Protein kinase-like (PK-like) 131 423 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2753 Lac-Chr4:46390041 Lac2g0081 Lac-Chr2:571877 1.00E-68 dispersed
Lac8g2966 Lac-Chr8:46571745 Lac4g2753 Lac-Chr4:46390041 3.30E-39 transposed
Lac4g2753 Lac-Chr4:46390041 Lac6g0611 Lac-Chr6:5187206 2.30E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86155 PF07714 PK_Tyr_Ser-Thr 1.00E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2753 - - - 0.0