Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2792 ATGGAAGGTACTTCGCTTCACGGAACGCTTCACGCCACAATCTATGAAGTCGACAGGCTGCATGCTGGTGGTGAATCCAACGTCTTCAGCAAGTTAATGCAAAACATTGAGGAGGCTGTTGGAATTGGCAAAGGAGTAACCAAACTATATGCAACTATAGATTTAGAAAAGGCTAGAGTTGGGAGGACACGCATATTGGAAAATGAACCCAATAACCCAAGATGGTATGAATCTTTTCACATCTACTGTGCTCATAGGGCATCAAATGTTATCTTCACCGTGAAGGATGATAATCCCATTGGTGCAAGTTTGATTGGACGTGCATATGTACCTGTGGAAGACCTCATAGATGGGGAGATCGTCGACAAGTGGGTTCCAATCTTGGATGAAGAAAAAAATCCAGTTGAAGGAGAATCTAAGATTCATGTCAAGCTTCAATACTTCAGTGTTACTAAAGATCGCAATTGGGGTCGTGGTATAAGAAGTCGTAAGTTTCCTGGAGTCCCCTACACATATTACTCACAGAGACAAGGTTGTAAGGTCTCTTTGTATCAAGATGCTCATATCCCTGATAATTTTATTCCTAAAATACCTCTTGCTGGAGGAAAGAAATATGCTCCCGCCAGATGTTGGGAAGATATTTTTGATGCCATACAAAACGCAAAACACCTGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGGTAAGGGACTCAAGGAGGCCAAAGCCCGGAGGAGACACCATGCTTGGTGAGCTGCTTAAGAAGAAAGCAAGTGAAGGCGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTTGGGTTGCTAAAAAAGGATGGTCTGATGGCTACTCATGATGAAGAAACTGAACATTACTTTCAAGATACTGATGTGCACTGTGTCTTGTGCCCTCGTAATCCTGACGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCATCAGAAGATTGTTGTGGTGGATAGCCCAATGCCAAGTGGAGATTCGGATAAGAGGAGAATTGTGAGTTTCGTTGGTGGCCTTGATCTCTGTGATGGCAGGTATGACACACCCTTTCATTCCCTTTTCCGGACATTGGATACTGCACATCACGACGATTTCCATCAACCAAATTTTCCTGGTGCATTAATAACAAAAGGTGGACCAAGGGAACCTTGGCACGACATCCATTCCCGACTTGAAGGGCCCATTGCCTGGGATGTCTTATTCAATTTTGAGCAAAGGTGGAAGAAACAAGGCGGGAAGGATATACTTGTGCAGCTTCGAGAGCTTGATGAAATAATTATTCCTCCATCTCCTGTTATGTACCCAGATGACCATGATTCATGGAATGTTCAATTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCTGAGACCCCCGAAGATGCTGCTAAGGCTGGGCTAGTCAGTGGGAAAGATAACATCATTGATCGAAGTATTCAAGATGCTTACATTAATGCTATTCGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATGATATCAAGCCTGAGGATATCGGTGCCTTGCATTGTATCCCAAGAGAGCTTTCCCTTAAGATCATTAGTAAGATTGCAGCAGGGGAAAGGTTCACTGTCTATGTAGTTGTTCCAATGTGGCCAGAAGGAATACCAGAAAGTGGATCCGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGACGTGATTGAGGCTCTTAGAGATCAAGGCATCGAGGAAGACCCTCGTAACTACTTGACATTCTTCTGTCTTGGCAACCGGGAAGTCAAGAGGTCTGGAGAATATCAACCTCCAGAAGCACCAGAGGATGATTCTGATTATTTGAAAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGATGAGTACATAATCGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGGGACTCTGAGATAGCTATGGGCGCTTATCAGCCATATCATCTGTCAACTCATGAACCTGCCCGTGGTCAAGTTCACGGATTCCGTATGGCCCTCTGGTATGAACATCTTGGTATGCTTGATGAAACTTTCCTTAGGCCAGAAAGCGAAGAATGTGTTGCGAAGGTTAACAGAGTTGCTGATAAATATTGGGATCTGTATTCGAGTGAAACACTTGAGAGGGACTTGCCCGGTCACCTCCTCCGCTATCCCATCGGCATATCCAGTGAAGGAAATGTCACAGAGCTCCCAGGATTTGAGTTCTTCCCCGACACCAAAGCTCGCATACTCGGAACCAAATCTGACTACCTCCCTCCCATCCTCACTACCTAG 2427 44.09 MEGTSLHGTLHATIYEVDRLHAGGESNVFSKLMQNIEEAVGIGKGVTKLYATIDLEKARVGRTRILENEPNNPRWYESFHIYCAHRASNVIFTVKDDNPIGASLIGRAYVPVEDLIDGEIVDKWVPILDEEKNPVEGESKIHVKLQYFSVTKDRNWGRGIRSRKFPGVPYTYYSQRQGCKVSLYQDAHIPDNFIPKIPLAGGKKYAPARCWEDIFDAIQNAKHLIYITGWSVYTEIALVRDSRRPKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHYFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGDSDKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGALITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDILVQLRELDEIIIPPSPVMYPDDHDSWNVQLFRSIDGGAAFGFPETPEDAAKAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDDIKPEDIGALHCIPRELSLKIISKIAAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTFEMMYKDVIEALRDQGIEEDPRNYLTFFCLGNREVKRSGEYQPPEAPEDDSDYLKAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSTHEPARGQVHGFRMALWYEHLGMLDETFLRPESEECVAKVNRVADKYWDLYSSETLERDLPGHLLRYPIGISSEGNVTELPGFEFFPDTKARILGTKSDYLPPILTT 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46650671 46654185 - Lag0002912.1 Lac4g2792 606324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2792 808 SMART pld_4 654 681 IPR001736 GO:0003824(InterPro)
Lac4g2792 808 SMART pld_4 326 364 IPR001736 GO:0003824(InterPro)
Lac4g2792 808 Pfam C2 domain 44 126 IPR000008 -
Lac4g2792 808 SUPERFAMILY Phospholipase D/nuclease 452 738 - -
Lac4g2792 808 CDD C2_plant_PLD 6 148 - -
Lac4g2792 808 Gene3D C2 domain 7 157 IPR035892 -
Lac4g2792 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824(InterPro)
Lac4g2792 808 Pfam Phospholipase D C terminal 726 798 IPR024632 -
Lac4g2792 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Lac4g2792 808 CDD PLDc_pPLDalpha_2 492 701 - -
Lac4g2792 808 Gene3D Endonuclease Chain A 200 442 - -
Lac4g2792 808 PANTHER PHOSPHOLIPASE D 11 795 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac4g2792 808 Pfam Phospholipase D Active site motif 656 681 IPR001736 GO:0003824(InterPro)
Lac4g2792 808 Pfam Phospholipase D Active site motif 327 364 IPR001736 GO:0003824(InterPro)
Lac4g2792 808 FunFam Phospholipase D 467 700 - -
Lac4g2792 808 SUPERFAMILY Phospholipase D/nuclease 151 442 - -
Lac4g2792 808 CDD PLDc_pPLDalpha_1 201 378 - -
Lac4g2792 808 Gene3D Endonuclease Chain A 477 699 - -
Lac4g2792 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lac4g2792 808 FunFam Phospholipase D delta 201 444 - -
Lac4g2792 808 SMART C2_3c 31 124 IPR000008 -
Lac4g2792 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824(InterPro)
Lac4g2792 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2427 Lac-Chr12:41355974 Lac4g2792 Lac-Chr4:46650671 3.70E-172 dispersed
Lac4g2792 Lac-Chr4:46650671 Lac6g0638 Lac-Chr6:5414661 0.00E+00 dispersed
Lac11g0678 Lac-Chr11:7033408 Lac4g2792 Lac-Chr4:46650671 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2792 K01115 - csv:101206113 1587.78