Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2798 ATGACATATTTTCCTAGTTTAAGCAATCAAAGAGACTCCATGTTAGGTGACCAGAAACTTGGTTCTTCTTGTCAAGAACAGCCTCTCTGTTCTGGGAATATGATGATGTTTATGAATCATCAAGACTCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAACTATGTTGAAACTGTGGGAGATAGAATTAATGGTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCATTGTCTTCATTTCCTCCCCAATATCAGACCCCTGCCATGGCTTCTTCATTCATCAATGCACCTCCTTCGATCTTCGAGAAGAGGCCGAATCTGAAACCTTGTATGTCTGATGCGAAAAATGGCATGTACATGGGAGTAGGTATTGCAAACTCGACATTGAATTCGATATACATCGAAGCTGCACAGCAATTGCTCGACGAAATGGTTAGCGTCCGGGAAGCTTTGAAGGAGCTAAAGTCTAAGAAACTCAAAGGTTCCAATGGTTTGGGTGTTGATAGCTGCAGAGAAAATGATAGGGGATCTAATGATCTGACTGGGGAGATGTGTTCCGATGCGAGGGAGTCATTGATCGCCATTCCGTCTGGTGATCTATTGCCTACCGAACGACAGGACTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAGCTGCAGTTTCTGGCATCGTCTTTCGACATGGTAGCAGGCCGTGGGGCTGCAGAGTTCTACACTGCACTTGCACACCGGACTATTTCGTGTCACTTTCGTCGTTTGCGCGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAGCCTTGGGGGAGCAAGATGCTTCACATTCTGGTCAAGAGGGCATTCCCCGTCTCCGCTTTGTTGATCAGCAGCTCAGGCAGCAGAGGGCCCTTCAGCAGCTCGGCGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCAGAAAGCTCGGTGTCGATTCTTCGTGCGTGGCTGTTCGAACACTTCCTCCATCCATATCCTAAGGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACCAGAAACCAAGTTGCAAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCGATGGTTGAGGAGATGTACAAAGAAGAATTCGGAGACTCCAACATGGACATCAAATCCTCACCAGAAAATGCATCCAAAGCCACATGGAACAATTCACTATTCTCCGAAGACAGGGGAGGAGACGAGTTGCACGGCAGCACGAAATCTGCAGCAAATAACAGCGAGCGAGTCCTCTACCGCCCGTGTTCTACCGACGACATGATCAAGTCGAGTAACTTCTCGATCGGCGGAGACGTTTCACTTGCACTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGCATGTTTGGGAGTAACAACAGAATGGTGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTTCCATGTTTGGAACCAGAGAGGCATCATCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTGTAGTTTGA 1644 46.17 MTYFPSLSNQRDSMLGDQKLGSSCQEQPLCSGNMMMFMNHQDSSCRDYSEIFSGVSSNYVETVGDRINGEMAFIPPVVGILDDSNFQCQGVSLSLSTHSPSVVSLSSFPPQYQTPAMASSFINAPPSIFEKRPNLKPCMSDAKNGMYMGVGIANSTLNSIYIEAAQQLLDEMVSVREALKELKSKKLKGSNGLGVDSCRENDRGSNDLTGEMCSDARESLIAIPSGDLLPTERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQFLASSFDMVAGRGAAEFYTALAHRTISCHFRRLRDAINAQIEVTRRALGEQDASHSGQEGIPRLRFVDQQLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDIKSSPENASKATWNNSLFSEDRGGDELHGSTKSAANNSERVLYRPCSTDDMIKSSNFSIGGDVSLALELKHCEGDEFGMFGSNNRMVVGSVELEAQDFPCLEPERHHQCRLTSSNMLHDFVV 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46677984 46680142 - Lag0002918.1 Lac4g2798 606330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2798 547 CDD homeodomain 349 410 IPR001356 GO:0003677(InterPro)
Lac4g2798 547 SUPERFAMILY Homeodomain-like 350 417 IPR009057 -
Lac4g2798 547 SMART HOX_1 349 413 IPR001356 GO:0003677(InterPro)
Lac4g2798 547 MobiDBLite consensus disorder prediction 1 20 - -
Lac4g2798 547 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac4g2798 547 Coils Coil 162 185 - -
Lac4g2798 547 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677(InterPro)
Lac4g2798 547 SMART prehox3 150 301 IPR006563 -
Lac4g2798 547 Pfam Associated with HOX 157 299 IPR006563 -
Lac4g2798 547 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 111 441 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac4g2798 547 Gene3D - 346 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2798 Lac-Chr4:46677984 Lac9g1723 Lac-Chr9:36821664 5.50E-93 dispersed
Lac4g2798 Lac-Chr4:46677984 Lac10g2756 Lac-Chr10:42068568 4.50E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23775 PF07526 POX 3.30E-38 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2798 - - - 0.0