Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2812 ATGGCGGCTGGCAATGAAATTGCCTTTGATTGCTTTGCTCTGCTTTTGCTTGTGGTGTTTTCAAACGCCCAATCCGACTTATTGTCACAAGGCCAAGAACTAACACCTGGGTCTTGGCTAGTTTCAGCCACAGGGACTTTCTCCCTCGGGTTCTACAGTCCTAGCCTATTGAACAACAGTCACATAGCCATTTGGTACCACGAAGATTCACAGAACCCAGTGTGGATTGCCAATCGAAACTTTGCATTTCCCAGAAATTTTGGGACGCCCTGTCTCACAATCGATAGCAACGGCAGCTTGAAGATTGTCCCTAAAGAAAGAAATGGGCGTGCCTATAATTTCTATCTCTTTCAACTTGAACAACCCACTAACACCAGCGCCATTCTTCTAGACAATGGCAACTTTGTTCTGGGTGTGTTGAATCCAGATGGTTCCATTAAGCAACAGCTATGGCAGAGCTTTGATCATCCAACAGACACTCTTCTTCCCGGGATGAAACTTGGGGTCAACCACAAAACTGGATCCACTTGGTCTGTAACATCCCGAAGAGGCGATTATTCTGTTCTATCAGGCTCTTTCACTCTCACAATGAATCCCAACAACACAAACCAGTTGCTGATATTGCTTAGAGGAGCCGTTTTCTGGACCAGTGGAAACTGGCAGGATGGCCGATTTGAATCCTCAGAAGAACTTTCCAGCAAACAAGGATTCGTGTTCAATCGAGTCTCAAATGAGAACGAGACCTTTTTCAGTTACTCAAAGGAGAATGAGAACAATGGAGTGACTGAAGTTGGACCCCGGTTGAGATTGGGCAACGATGGGAAATTGGTGGGAAGTAATTGGGATTTGAAAGTTGAATGTCCCTATTTTGAAAACGAGTTGTTTGAGGCTAAGGGTGTTTCCGAAGAAGGGTGTGTGGGGAAAAGGCAGCACAAAGTACCCGAGTGTCGAAATCCGCCAAAACAATTTTCGACTACACAGAAATTTGGTAACATGGAGGGAAATGGTTTGAAGTACAGAGAAAGTGAGAATCTGACGATTTATGATTGTGAAAAGAATTGCATTTCGAGCTGTGGTTGCATTGCCTTTAGTTCTACGAATGAAGAAGGCACTGGCTGTGAGATGTGGATTGAAGGAGCAAGGTTTGTTCCTGTGGAGGGAGGCAAGCGGATTATTTGGTCCCTTCAGGAGACTGAAGGGAAAGTTCCTGCAGGAAAAAAAAGGGTATGGTTGCAAGTTACTATCGGTCTAATAGTACCTGCAACTCTTCTCCTATTGTGTTTTATTTTCTATCTCAAATGGAAGACACAAATATTCAAAGCTATTAGAAAAATGAGGAGGAAGGATTCAGAGCATCAAAATTTTCTACAAGAAATGCAGTCCAAATCTAAAAGTTCTAACATCCTAAAAATGAAGAACAAGCACAGAAGAGACATAAAGAACTTTGAATTGCAGTTTTTCACCTTTGAAAGTGTAGTGTCTGCGACAAACAATTTCGCTGACGATTGTAAACTCGGAGAGGGTGGTTTTGGACCGGTTTATAAGGGAAGTTTGGCTGATGGGCAAGAAGTTGCCATTAAAAGACTGTCAAAGAATTCTGGACAAGGACTAGAGGAGTTCAAGAATGAAGCAATGTTGATTGCCAAACTGCAGCACACTAATCTGGTTAGGCTTATTGGCTGCTGCATTTATAAAGAAGAGAGGTTATTGGTGTATGAGTACATGTCCAACAAAAGCCTTGACTCCTTCCTTTTTGATCCAAAAAGAAAGCTAATACTAGATTGGAACAAACGCCTGCACATAATTCAAGGGATAATTCAAGGACTGCTCTACCTTCACAACTACTCGAGACTACGAATAATTCATCGAGATTTAAAAGTTAGCAATATCTTGCTCGATGATGAGATGAATGCAAAAATATCAGATTTTGGCATGGCCAGAATCTTTAAGCCCACCGAGCAAGAAGCAAATACTAGTCACATTGGTGGTACATATGGATATATATCACCCGAATATGCAATGGGAGGTATCTTCTCAATAAAATCAGATGTTTACAGCTTTGGAGTGTTGTTATTAGAGATCATAACAGCTCGAAAAAACTATCACAATTATGATGTGGAAAGACCTATCAATCTCATAGGATATGCATGGGAATTGTGGATGGATGGCAGAGGAGAAGAATTGATTGATTCGACTTTGTGCAACTCTGATCAAAAACCAAAAGCTCTAAGATGCATCCATGTTAGTCTTTTATGTGTCCAACAAATAGCAGCAGATAGACCTACCATGCTTGATGTTTATTCCATGATTCATAATGATTCTACTCAACTTCCATTACCAAACCAGCCTCCATTTTTCATCACCCAGAACTCCGAATTGGAGGTGGTGACAGATGACAATGAGCTGAAATCGGAATCAGCAACAGAAATACATTCTTTGAATGATATGTCAGTCTCTGTGATGGTTGCTAGATGA 2475 41.45 MAAGNEIAFDCFALLLLVVFSNAQSDLLSQGQELTPGSWLVSATGTFSLGFYSPSLLNNSHIAIWYHEDSQNPVWIANRNFAFPRNFGTPCLTIDSNGSLKIVPKERNGRAYNFYLFQLEQPTNTSAILLDNGNFVLGVLNPDGSIKQQLWQSFDHPTDTLLPGMKLGVNHKTGSTWSVTSRRGDYSVLSGSFTLTMNPNNTNQLLILLRGAVFWTSGNWQDGRFESSEELSSKQGFVFNRVSNENETFFSYSKENENNGVTEVGPRLRLGNDGKLVGSNWDLKVECPYFENELFEAKGVSEEGCVGKRQHKVPECRNPPKQFSTTQKFGNMEGNGLKYRESENLTIYDCEKNCISSCGCIAFSSTNEEGTGCEMWIEGARFVPVEGGKRIIWSLQETEGKVPAGKKRVWLQVTIGLIVPATLLLLCFIFYLKWKTQIFKAIRKMRRKDSEHQNFLQEMQSKSKSSNILKMKNKHRRDIKNFELQFFTFESVVSATNNFADDCKLGEGGFGPVYKGSLADGQEVAIKRLSKNSGQGLEEFKNEAMLIAKLQHTNLVRLIGCCIYKEERLLVYEYMSNKSLDSFLFDPKRKLILDWNKRLHIIQGIIQGLLYLHNYSRLRIIHRDLKVSNILLDDEMNAKISDFGMARIFKPTEQEANTSHIGGTYGYISPEYAMGGIFSIKSDVYSFGVLLLEIITARKNYHNYDVERPINLIGYAWELWMDGRGEELIDSTLCNSDQKPKALRCIHVSLLCVQQIAADRPTMLDVYSMIHNDSTQLPLPNQPPFFITQNSELEVVTDDNELKSESATEIHSLNDMSVSVMVAR 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46774650 46778272 + Lag0002932.1 Lac4g2812 606344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2812 824 Pfam PAN-like domain 343 378 IPR003609 -
Lac4g2812 824 CDD B_lectin 34 157 IPR001480 -
Lac4g2812 824 SMART blect_4 31 157 IPR001480 -
Lac4g2812 824 PIRSF SRK 5 287 IPR024171 GO:0004674(InterPro)
Lac4g2812 824 PIRSF SRK 282 824 IPR024171 GO:0004674(InterPro)
Lac4g2812 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Lac4g2812 824 SUPERFAMILY Protein kinase-like (PK-like) 483 798 IPR011009 -
Lac4g2812 824 Pfam D-mannose binding lectin 74 183 IPR001480 -
Lac4g2812 824 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 144 786 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac4g2812 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 463 574 - -
Lac4g2812 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2812 824 Gene3D Phosphorylase Kinase; domain 1 470 574 - -
Lac4g2812 824 SMART serkin_6 499 751 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2812 824 Pfam Protein tyrosine and serine/threonine kinase 503 711 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2812 824 CDD STKc_IRAK 505 770 - -
Lac4g2812 824 ProSiteProfiles Bulb-type lectin domain profile. 25 150 IPR001480 -
Lac4g2812 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 780 - -
Lac4g2812 824 Gene3D - 18 155 IPR036426 -
Lac4g2812 824 ProSiteProfiles Protein kinase domain profile. 499 750 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2812 824 Gene3D Transferase(Phosphotransferase) domain 1 575 778 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2812 Lac-Chr4:46774650 Lac4g2867 Lac-Chr4:47245401 1.00E-281 dispersed
Lac4g2812 Lac-Chr4:46774650 Lac5g1633 Lac-Chr5:33156031 3.10E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86156 PF07714 PK_Tyr_Ser-Thr 4.70E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2812 - - - 0.0