Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2834 ATGAGAAAAGAAGAAAATCACATCAGGGCTAATATTGGAGAATTCCCTGGTAGAATAACTCGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCAACAGGATAGGCGGGTTGCACGAGCTAATCTGAAAAGAGCTGCCTCAGAAGAAAATAGCTGCCATTCTATTGCTAAATCATCTCGGCCATGTAAGAGGAGGGCCGTGCTTCAGGATGTCAGCAATATATGCTGTGAACCTTCATACTCAAAATGTTTTGATGCAGCTAAAATTCAGGCCAATAGTAGTAAGCCAACAGTCAAAAACCGTGTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTTGATCGTAGAGCCAAAGGAGCTTCATCAGTTGGTGTGGCTTACTCCAAGATCCCTCTTGATCTTAGAACACAAGGTGTACAAGCGAATGTCAAATCGAAAGCTAAGTTGAAAGTTGAACATTCAAGTAATTCTGAAGATCATGAGACACATCATCGAGTAGGTGGTATAAAGGAAGAGGTCACTAGTGATCTTCGGGATGATAATTGGAGGTCTCAAAGCCCTTCAGAGTCTCAAAATTTTCAAAATAAAGAGAAAGTGTTGCTTCTGGGGACAAGAAGCAACCTGGACATTACAGACATTGATTGTAATGACAGAGATGCTCAACTGTGCACAGTCTATGCCCATGATATCTACAACAATTTACGTGTTGCTGAGAATGTCATGTTTCCTTATATGGAATGGAGCATTAAGATTCCTCAATCGCTTTCTGTGAGAGTACTAATAGAGCTAAGCAGAAGGCCGCGTCCCAATTTCATGGAAACAGTGCAAACCGATATTACACAAAGCATGCGAGGGATATTGGTTGATTGGCTTGTAGAGGTATCGGAGGAGTACAAGTTAGTGCCAGATACACTCTACCTCACTGTATTTTTCATTGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGTACCTACACAAAGGAGGAGGTATTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCCACACCAACTGCGAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACTTATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTAGCTGAACTAACACTGGTTGACTACGGTTTCTTGAATTTTCTTCCCTCGGTTATAGCTGCATCAGCTGTATTTCTTTCCAAGTGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATATTATACCTCGTATAAAGCATCGGATCTGAAACAAACTGTTCTTGCTTTACAAGATTTACAGTTGAACACAAATGGTTGTCCTCTCAGTTCGATTCGCGTCAAGTATCGGCAAGAAAAGTTCAAAGCCGTCGCAACTTTGTCTTCTCCGAAATTACTTGATACGCTATTCAGAACCACGTGTTAG 1599 42.28 MRKEENHIRANIGEFPGRITRARAAAFSASAQLPPKVPAHQQDRRVARANLKRAASEENSCHSIAKSSRPCKRRAVLQDVSNICCEPSYSKCFDAAKIQANSSKPTVKNRVKKSKGASSVGVANSKVPLDRRAKGASSVGVAYSKIPLDLRTQGVQANVKSKAKLKVEHSSNSEDHETHHRVGGIKEEVTSDLRDDNWRSQSPSESQNFQNKEKVLLLGTRSNLDITDIDCNDRDAQLCTVYAHDIYNNLRVAENVMFPYMEWSIKIPQSLSVRVLIELSRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGITCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSTPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVLALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLFRTTC 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46964845 46970026 - Lag0002954.1 Lac4g2834 606366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2834 532 PIRSF Cyclin_A_B_D_E 33 270 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lac4g2834 532 PIRSF Cyclin_A_B_D_E 274 530 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lac4g2834 532 SUPERFAMILY Cyclin-like 398 523 IPR036915 -
Lac4g2834 532 MobiDBLite consensus disorder prediction 166 210 - -
Lac4g2834 532 CDD CYCLIN_AtCycA-like_rpt2 398 512 - -
Lac4g2834 532 Pfam Cyclin, C-terminal domain 398 520 IPR004367 -
Lac4g2834 532 Pfam Cyclin, N-terminal domain 278 396 IPR006671 -
Lac4g2834 532 FunFam Cyclin A1 385 517 - -
Lac4g2834 532 Gene3D - 283 396 - -
Lac4g2834 532 SMART Cyclin_C_2 398 521 IPR004367 -
Lac4g2834 532 PANTHER CYCLINS 227 508 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac4g2834 532 SMART cyclin_7 402 490 IPR013763 -
Lac4g2834 532 SMART cyclin_7 305 389 IPR013763 -
Lac4g2834 532 SUPERFAMILY Cyclin-like 272 395 IPR036915 -
Lac4g2834 532 Gene3D - 278 517 - -
Lac4g2834 532 MobiDBLite consensus disorder prediction 166 199 - -
Lac4g2834 532 FunFam Mitotic cyclin 6 283 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2834 Lac-Chr4:46964845 Lac6g1238 Lac-Chr6:12008772 2.20E-94 dispersed
Lac4g2834 Lac-Chr4:46964845 Lac2g0633 Lac-Chr2:4734814 1.60E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2834 K06627 - csv:101222299 892.108