Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2841 ATGGAGATCAAAGAAAAGAAGAGAGTTTCAAGTATCTCCTCTCCATTAATGTCATCTTCTTTGATGGCTTTCCTCCTGGTTTTTCTCTGTTTCCTCTTTTATGGCCCCAACGCCGCCTTTGCGGCCGGGACAAGCGCTTCCTTCATTCCCAAAGATAATTTTCTCATTGACTGTGGTGCCAACAAGGAAATTGGTGCACTCCCAGATGGAAGAGTGTTCAAAACTGATGAGCAATCCAAGCAGTTCTTGGAGGCCAAAGATGATATCATAGCCGCCGCCCCACAGGACACCAAGGCGCCGTCCCCGGTCGACTTAACGGCGAGAATCTTCCTCCAAGAAGCTACTTACAATTTTCAGTTGGCTGAGCCAGGATGGCATTGGCTGCGCCTCCATTTCCTGCCTATGAAAACCAAGGACTTTGATCTCCTGCAGGCCAAGTTTTCAGTAACAACTGAAAAGTATGTCTTGCTTCACAGCTTCAACATCAACAATGAATCCACATTTGTTCTCAAGGAGTTTCTGCTTAATATCACTGAACCAAAACTCTCAATCAAGTTCTTCCCAATGAAGAATTCGGCTGCTTACATCAATGCCATCGAGGTCGTCTCCGCTCCGGTCGACTTGATCGCCGACTCCAACGTGGAGCTCTCTCCGGTCGGGACGATCGAGGGTCTGACCAAATATGCATTTCAGACATTGTATAGGTTGAACATGGGAGGACCTGTAATCACTTCAAGAAATGACACTCTTGGAAGGACATGGGACAATGATGAAGTTTATAGGACACCTAAAGCTGCTGGTAGGAATGTGGTTGTTGAAACCAATAGCATCAAATACCAAGGGGGCTTGAAAGAAACAGGCATGTTAATTGCTCCTCCAAGTGTTTATGCAAGTGCAGTTCAAATGGGAGATGTTCAAGTCAATGTACCAAATTTCAATATCACTTGGAAATTTGAGGCGGAACCCTCATTTAGCTACCTAATTCGCTTTCATTTCTGTGACATTGTCAGCAAAGTACTCAATAATCTCTATTTCAATGTTTATGTAAATGGGAAGGCTGCCATAAGCAACTTGGATTTGTCACACAAGCTAGGAAGCTTGGCAACTGCATACTACAAGGATGTTGTGGTTAATGCTTCCTTGATTGTAGAAGGAATGACAATTCAAATCAGTCCGGCTAACGTCGAAACCGGCGATGCGAATGCCATTCTAAATGGCTTAGAGGTATTGAAAATAAGCAACTCTGTTAATAGTCTGGATGGAGAGTTTGGAGTGGATGGTAAGTCTGCGAATGGTTCTAACCGTGGCACGGTTGCTGCCGTCGGGTTCGCCATGATGTTCGGGGCGTTTGTTGGGCTCGGCGCCATGGTGATGAAATGGCACAAAAGGCCTCAAGATTGGCAGAAGAGGAACAGTTTCTCTTCCTGGTTGCTTCCTGTACATGCTGGTGATTCAAGCTTTATGACAAGCAAGACCTCATATGGTTCACACAAGACCAACATTTACTCCTCTACTTTAGGCCTTGGAAGGTTCTTCACTTTAGCAGAGCTGCAAGAAGCCACCAAGAACTTTGATCCCAATTCAATCATTGGTGTTGGTGGGTTTGGAAATGTGTACCTTGGAGTGATTGATGAAGGGACCAAGGTTGCAGTTAAGAGAGGAAATCCTCAATCTGAACAAGGCATAACAGAATTCCAAACAGAAATTCAGATGCTTTCCAAACTCAGACACAGGCATTTGGTTTCTCTGATTGGATACTGTGATGAAAACTCTGAAATGATCTTGGTATATGAGTTTATGTCAAATGGTCCATTCAGAGACCACTTGTATGGAAAGGACTTGCCTCCATTGTCATGGAAGCAAAGGCTAGAGATCTGTATCGGAGCGGCTCGAGGTCTTCATTACCTACACACAGGAACAGCACAGGGAATCATTCACCGTGATGTCAAAACGACCAACATTTTGCTCGACGAGAACTTCACCGCAAAAGTTGCTGATTTCGGGCTGTCAAAGGATGCTCCAATGGGGCAGGGACATGTCAGTACAGCAGTGAAGGGAAGTTTTGGATATTTGGATCCAGAGTACTTTAGACGGCAACAGTTGACAGAAAAATCAGATGTTTATTCTTTTGGAGTTGTTCTGCTTGAGGCATTGTGTGTAAGGCCAGCAATCAACCCATCTTTGACAAGGGAACAAGTGAACTTGGCTGATTGGGCAATGCAAAATAAGAGAAAAGGGTGTTTGGAAAAGATAATGGATCCTCTTCTAGTTGGAGCCATAAATCCTGAGTCCATGAAGAAGTTTGCAGAGGCAGCAGAGAAATGTCTTGCTGAACATGGTGTTGATAGGCCAAGCATGGGGGATGTGCTCTGGAATTTGGAGTATGCATTGCAACTTCAGGAAGCATTCTCACAAGGCAAGACTGAAGATGAAAGCAAAGCTGCAGGCACGGAAGCTGTCACTCCCACTGCTGCTGTCGACACTCCGACAAATGCACCGAACTCCGACAACCGCCCTGTCGTGCAGCCAGAACAGAATAGGCAACCGGCGGAGGTCCAAACCATTGATGATCACTCAGGAAGTGCAATGTTTGCTCATTTTTCTAATCTCAACGGTAGATGA 2622 45.19 MEIKEKKRVSSISSPLMSSSLMAFLLVFLCFLFYGPNAAFAAGTSASFIPKDNFLIDCGANKEIGALPDGRVFKTDEQSKQFLEAKDDIIAAAPQDTKAPSPVDLTARIFLQEATYNFQLAEPGWHWLRLHFLPMKTKDFDLLQAKFSVTTEKYVLLHSFNINNESTFVLKEFLLNITEPKLSIKFFPMKNSAAYINAIEVVSAPVDLIADSNVELSPVGTIEGLTKYAFQTLYRLNMGGPVITSRNDTLGRTWDNDEVYRTPKAAGRNVVVETNSIKYQGGLKETGMLIAPPSVYASAVQMGDVQVNVPNFNITWKFEAEPSFSYLIRFHFCDIVSKVLNNLYFNVYVNGKAAISNLDLSHKLGSLATAYYKDVVVNASLIVEGMTIQISPANVETGDANAILNGLEVLKISNSVNSLDGEFGVDGKSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMTSKTSYGSHKTNIYSSTLGLGRFFTLAELQEATKNFDPNSIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCVRPAINPSLTREQVNLADWAMQNKRKGCLEKIMDPLLVGAINPESMKKFAEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQEAFSQGKTEDESKAAGTEAVTPTAAVDTPTNAPNSDNRPVVQPEQNRQPAEVQTIDDHSGSAMFAHFSNLNGR 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47036274 47038895 - Lag0002961.1 Lac4g2841 606373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2841 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2841 873 CDD STKc_IRAK 530 794 - -
Lac4g2841 873 Pfam Malectin-like domain 56 411 IPR024788 -
Lac4g2841 873 FunFam Receptor-like protein kinase FERONIA 229 414 - -
Lac4g2841 873 FunFam receptor-like protein kinase FERONIA 488 599 - -
Lac4g2841 873 FunFam Putative receptor-like protein kinase 53 205 - -
Lac4g2841 873 Gene3D - 228 414 - -
Lac4g2841 873 Gene3D - 53 207 - -
Lac4g2841 873 PANTHER OS07G0166700 PROTEIN 512 801 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lac4g2841 873 MobiDBLite consensus disorder prediction 823 855 - -
Lac4g2841 873 SUPERFAMILY Protein kinase-like (PK-like) 508 791 IPR011009 -
Lac4g2841 873 Gene3D Phosphorylase Kinase; domain 1 485 599 - -
Lac4g2841 873 Pfam Protein tyrosine and serine/threonine kinase 529 731 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2841 873 SMART serkin_6 524 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2841 873 FunFam Receptor-like protein kinase FERONIA 600 814 - -
Lac4g2841 873 Gene3D Transferase(Phosphotransferase) domain 1 600 820 - -
Lac4g2841 873 MobiDBLite consensus disorder prediction 806 855 - -
Lac4g2841 873 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524(InterPro)
Lac4g2841 873 ProSiteProfiles Protein kinase domain profile. 524 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2841 Lac-Chr4:47036274 Lac6g2785 Lac-Chr6:45561095 3.70E-160 dispersed
Lac13g0863 Lac-Chr13:7023703 Lac4g2841 Lac-Chr4:47036274 8.90E-164 transposed
Lac1g3043 Lac-Chr1:51060762 Lac4g2841 Lac-Chr4:47036274 5.80E-64 transposed
Lac2g1300 Lac-Chr2:10838033 Lac4g2841 Lac-Chr4:47036274 1.80E-228 transposed
Lac3g0593 Lac-Chr3:4607524 Lac4g2841 Lac-Chr4:47036274 2.30E-256 transposed
Lac8g2269 Lac-Chr8:40916325 Lac4g2841 Lac-Chr4:47036274 1.70E-39 transposed
Lac8g2964 Lac-Chr8:46565059 Lac4g2841 Lac-Chr4:47036274 1.20E-42 transposed
Lac9g2521 Lac-Chr9:43902846 Lac4g2841 Lac-Chr4:47036274 4.30E-198 transposed
Lac4g2841 Lac-Chr4:47036274 Lac6g2998 Lac-Chr6:47585561 5.50E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86157 PF12819 Malectin_like 9.20E-36 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2841 - - - 0.0