Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2856 ATGCGAGCCAATTCCAATCGAGTTGAGAGCCTGGAATGTCATGAAACGGTGTTGACAATTCCGCCGGAAGCAATGCCGGCGCCGCCGCAAGAGACCGAGGAGATTCACAAGGTCTGCTTGCCTCCGAAGCAGACTACACTTCAGAAACTCAAGCACAAGCTATCGGAGGTGTTCTTCCCCGATGACCCCCTTCACAGATTCAAGAACCAAACGTGGTTAACAAAAGTGCTTTTGGGCCTTCAATTACTGTTCCCTGTTTTCCAGTGGGGCCCTGATTATTCCCTCGCTCTTTTCAAGTCTGACATCGTTTCTGGTCTCACAATTGCTAGCCTTGCTATTCCCCAGGGAATAAGTTATGCGAAACTTGCAAATTTGCCTCCCATCATCGGATTATATTCAAGTTTTGTGCCTCCACTGATATATTCCATCCTTGGAAGCTCTAGACATCTTGCTGTTGGCCCAGTTTCAATTGCCTCTTTGGTTATGGGATCGATGATCACTGAGGCAGTCTCTTATAACGAACAGCCAACTCTGTATCTTAAGTTAGCTTTTACTGCTACCTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGTTTGTTAAGGTTAGGCTTTGTGATTGATTTTCTGTCAAAGGCTACTTTAGTTGGCTTTATGGCTGGTGCAGCAGTAATTGTGTCATTGCAACAACTCAAAGGGTTGCTTGGAATTACCCATTTCACCTCCAAAATGCAATTTATTCCTGTCATGTCTTCTGTCTTTCACCACAAAGATGAGTGGTCCTGGCAAACTATTGTTTTAGGCCTCATTTTCCTACTCTTTCTTCTGGGAACAAGGCATATAAGCATCAAGAAACCAAAGCTTTTCTGGATTTCAGCAGCTGCTCCACTGACATCAGTTATTTTGTCCACTCTTTTAGTCTTCCTTCTCAGAACAAAAGTTCCTGGAATCTCAGTGATTGGTCATTTGCCAGAGGGTGTTAATCCTCCATCTATGAACATGCTGTACTTTACGGGTCCTCAATTGGCACTTGTCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACTGAAGGAATTGCCGTAGGAAGGACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAAGAAATGATGGCTATTGGTTTTATGAACATTGCTGGATCTTGTTCTTCATGCTATGTCACTACAGGATCATTTTCTCGGTCTGCTGTGAATTATAATGCCGGGGCACAAACAGCAGTTTCAAATGTAGTGATGTCAGCAACTGTGCTCATAACGTTGTTGTTTCTGATGCCCTTGTTCCATTATACTCCAAATTTCATCCTAGCAGCGATCATTATAACAGCAGTAATTGGGCTAATTGATTACCAAGCAGCCTGTAGGTTGTGGAAAGTTGACAAGCTTGATTTTGTAGCTTGTGTTTGTTCTTTCTTTGGCGTTCTTTTCATATCAGTTCCATTGGGTCTAGCCATTGCAGTTGGAGTCTCTGTTTTCAAGATTCTTTTGCATGTCACCAGGCCAAACACCATGGTTTTGGGGAATATTTCTGGGACTCAAATATTCCAAAACCTTGACCGATACCGAGACGCCTCAAGGGTGCCTTCATTCCTCATTCTTGCCATTGAATCTCCAATCTACTTTGCAAACTCAACATACCTACAAGAAAGGGTTCTAAGGTGGGTTAGGGAAGATGAAGAGCGGATAAAAGAGACTAATGACAGCCCACTGAAATGTGTGATCCTAGACATGACAGCTGTGACATCCATAGACACAAGTGGTATAGAAACAGTATGTGAAATTAGGAAGATGTTGATGCAAAAATCACTGCAGTTTGTGCTTGCAAATCCTGGTGGAAACGTGATGGAAAAAATGTATAAATCAAAGGCCTTGGAGCCGTTCGAGTTTAACGGTCTATACCTCTCCGTTGGAGAAGCTGTGAAGGACATTTCTTCTTTATGGAAGAGGCAGCCATAA 1983 42.86 MRANSNRVESLECHETVLTIPPEAMPAPPQETEEIHKVCLPPKQTTLQKLKHKLSEVFFPDDPLHRFKNQTWLTKVLLGLQLLFPVFQWGPDYSLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNEQPTLYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGITHFTSKMQFIPVMSSVFHHKDEWSWQTIVLGLIFLLFLLGTRHISIKKPKLFWISAAAPLTSVILSTLLVFLLRTKVPGISVIGHLPEGVNPPSMNMLYFTGPQLALVIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSATVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFVACVCSFFGVLFISVPLGLAIAVGVSVFKILLHVTRPNTMVLGNISGTQIFQNLDRYRDASRVPSFLILAIESPIYFANSTYLQERVLRWVREDEERIKETNDSPLKCVILDMTAVTSIDTSGIETVCEIRKMLMQKSLQFVLANPGGNVMEKMYKSKALEPFEFNGLYLSVGEAVKDISSLWKRQP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47177265 47180969 + Lag0002976.1 Lac4g2856 606388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2856 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
Lac4g2856 660 PANTHER SULFATE TRANSPORTER 74 651 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2856 660 Gene3D STAS domain 509 654 IPR036513 -
Lac4g2856 660 Pfam Sulfate permease family 98 477 IPR011547 GO:0016020(InterPro)
Lac4g2856 660 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lac4g2856 660 FunFam Sulfate transporter 31 509 654 - -
Lac4g2856 660 NCBIfam sulfate permease 85 648 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2856 660 SUPERFAMILY SpoIIaa-like 534 650 IPR036513 -
Lac4g2856 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Lac4g2856 660 Pfam STAS domain 532 648 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2246 Lac-Chr4:42165358 Lac4g2856 Lac-Chr4:47177265 8.20E-213 dispersed
Lac4g2856 Lac-Chr4:47177265 Lac7g0709 Lac-Chr7:5711075 9.80E-198 dispersed
Lac13g1631 Lac-Chr13:17611207 Lac4g2856 Lac-Chr4:47177265 3.20E-233 transposed
Lac3g0887 Lac-Chr3:7161697 Lac4g2856 Lac-Chr4:47177265 7.70E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2856 K17471 - csv:101203079 1186.02