Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2867 ATGAGAAATTTGGTAATGGCGAAGTGCTTTCTGTGCTGCTACTGCTTTACAGTGCTAGTGCTGGTGCTGGCAGAGTTCTCCCATGGCCAGTCGACAGAGGCCAACGTACTGACACAAGGCCAAAAGTTAACAACTGGGTCTCAGTTAATTTCACCCACCGGCACCTTTGTGCTCGGATTTTACAGTCCAACAACCAATTCCAGTTACGTAGGAATCTCCTACAACACTGATGGCCAGAGTCCAGTGTGGATAGCCAACCGAAACACTCCATTTCTCGACGATTCTGGGTCGATCAGCCTCACGATCGACGGCAACGGCAGCTTGAAAATTGTGGGGAATGGATATTCCTTTTCACTCTTTGATGTGAAAGAACCAACCAACAGCAGCGCCATTCTGAAGGACGACGGCAACTTCGTACTGCGTGAGCTCAGCCCAGATGGGTCAGTAAAGCGAGTGCTGTGGCAGAGCTTCGATCATCCAACAGACACTCTGCTTCCCGGGATGAAACTTGGGATCAATCACAAAACTGGATCCACTTGGTCTCTAACATCATGGAGAAGCTACGGGTCTCCTAAATCAGGAACTTTCACTCTGGAAATGAATCCAAACAATACAAATCAGTTACTGATGTCGTACAGTGGAGCTCTGTTTTGGAGCAGCGGGAATTGGAAAGACGGTTCGTTCGAGTTCTTTGACAACAACGATAAAGGAATCAATTTCAACCGAGTTTCGAATGAGGATGAAACGTACTTCATTTACTACGTCCCAAAATTTGATCAATCTCCTGTCGTTGTACCCATCTGCCCGTACCCCTGCTTTCGATATCCTAACTACGAACAACCAAGAAAGGTTCTACCCCAATTGAGATTAGAAGATGGTGGCTATTTGGAAGTGAACAATCAGCATTCGAACTTGATTTGTGATCTCATCTTTGAAAATGAGGATTCTTCTGAACGAGGGTGCGTGTGGACAAAGCAGCGGAAAGTGCCTGAGTGTAGGAATTCGGCGTATGTTCGCTCGCAGTGGATGTACGCTAACACGGAGGACAATAGCTCCAAGTACATAGCAAGTGAGAATCTAACGATGTTTGGATGCCAAAATTTTTGCCTTTCTGATTGTGATTGCATCGCTGTTGCTTCTACCAACGATGATGGCAGCGGCTGTCAGATTTGGAAGTCTGGAGCCATGTTTACTTCGGTCGACGGACGTCGACAGATTTGGTTTCTCGACACCAGTGTCGTCTACCAAGGAAAACAACTTGTTCATGCAAGAAAACAAAAGGTCTGGTTGAAAGTTACCATCGGTCTATCAGTAGTTGTATTTGTTCTTCTACTGGGTTTTATTTTCTACGTCAAATGGAGAAAACAAATATTCAAAGTTATCCACAAAATGAAGAAAAAATTTGTACGCGGGATGGGGGTCATCTCCGAAGGTTTTAACATTTTAGGAATAATGATCAGACAAATAAGAAATGGAAAAAAGAATCCCGAATTACAGTTTTTTGACTTTGAAAGCATCGTTTCTGCCACAAATAATTTTGCAGACGAATGTAAGCTCGGAAAAGGTGGTTTTGGACCTGTTTATAAGGGAATTTTGGCTGATGGCCAAGAAGTAGCCATTAAAAGATTGTCAAAGAATTCTGGACAAGGACTGGTGGAGTTCAAGAATGAAACTATTTTAATTGCCAAACTTCAACACACAAATCTGGTTAGGCTAATTGGTTGCTGCATTTATAAAGAAGAGAAATTGTTGGTGTATGAGTACATGCCCAACAAAAGCCTTGATTCCTTCCTATTTGACTCAGAGAAGAAGTTAATACTTGATTGGGATAAACGCTTGCACATAGTCCAAGGGATAGTCCAAGGACTACTCTATCTTCACAACTACTCAAGGGTACGTATAATTCATCGAGATTTAAAAGTTAGCAACATCTTACTCGATGAAGAGATGAACGCAAAAATATCAGATTTCGGTATGGCTAGAGTCTTTAAGCCATCAGAGCATGAAGTAAACACGAGCAAGGTTGTTGGTACATATGGCTATATATCACCGGAGTATGCGATGGAGGGTATTTTCTCAATAAAGTCAGACGTCTACAGCTTTGGAATATTGTTATTGGAGATCGTAACAAGTCAAAAGAACTATAACAATTATGATACGGAACGACCTCTCAATCTCGTAGGATATGCATGGGAATCGTGGGTGAATGGGAGAGGAGAAGAGCTGATTGATTCGACTTTGTGCAACTCTGCTCAGAAAACAAAGGCTCTCAGATGCATCCATGTGAGTCTTTTGTGTGTTCAACAAATACCAGCAGACAGACCGACGATGCTGGACGTTTATTTCATGATTAACAATGATTCTACTCAACTTCCATCACCCAAACAACCTGCATTTTTCGTTGCTCAAAACCCACACTCCTCGGAAGTGATGGTGGTCGAGAGTGGACTCATCCCAGAACCAACAATACAGGAAATTGTTGGTTCATTGAGCAGTATGTCTGTCTCAGTGATGATTGCCAGATGA 2526 42.83 MRNLVMAKCFLCCYCFTVLVLVLAEFSHGQSTEANVLTQGQKLTTGSQLISPTGTFVLGFYSPTTNSSYVGISYNTDGQSPVWIANRNTPFLDDSGSISLTIDGNGSLKIVGNGYSFSLFDVKEPTNSSAILKDDGNFVLRELSPDGSVKRVLWQSFDHPTDTLLPGMKLGINHKTGSTWSLTSWRSYGSPKSGTFTLEMNPNNTNQLLMSYSGALFWSSGNWKDGSFEFFDNNDKGINFNRVSNEDETYFIYYVPKFDQSPVVVPICPYPCFRYPNYEQPRKVLPQLRLEDGGYLEVNNQHSNLICDLIFENEDSSERGCVWTKQRKVPECRNSAYVRSQWMYANTEDNSSKYIASENLTMFGCQNFCLSDCDCIAVASTNDDGSGCQIWKSGAMFTSVDGRRQIWFLDTSVVYQGKQLVHARKQKVWLKVTIGLSVVVFVLLLGFIFYVKWRKQIFKVIHKMKKKFVRGMGVISEGFNILGIMIRQIRNGKKNPELQFFDFESIVSATNNFADECKLGKGGFGPVYKGILADGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCIYKEEKLLVYEYMPNKSLDSFLFDSEKKLILDWDKRLHIVQGIVQGLLYLHNYSRVRIIHRDLKVSNILLDEEMNAKISDFGMARVFKPSEHEVNTSKVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIVTSQKNYNNYDTERPLNLVGYAWESWVNGRGEELIDSTLCNSAQKTKALRCIHVSLLCVQQIPADRPTMLDVYFMINNDSTQLPSPKQPAFFVAQNPHSSEVMVVESGLIPEPTIQEIVGSLSSMSVSVMIAR 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47245401 47249335 + Lag0002987.1 Lac4g2867 606399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2867 841 PIRSF SRK 5 268 IPR024171 GO:0004674(InterPro)
Lac4g2867 841 PIRSF SRK 307 835 IPR024171 GO:0004674(InterPro)
Lac4g2867 841 ProSiteProfiles Bulb-type lectin domain profile. 34 153 IPR001480 -
Lac4g2867 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 483 588 - -
Lac4g2867 841 Pfam PAN-like domain 354 393 IPR003609 -
Lac4g2867 841 Pfam Protein tyrosine and serine/threonine kinase 517 725 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2867 841 Gene3D Phosphorylase Kinase; domain 1 487 588 - -
Lac4g2867 841 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 147 800 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac4g2867 841 SMART blect_4 34 160 IPR001480 -
Lac4g2867 841 ProSiteProfiles Protein kinase domain profile. 513 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2867 841 SUPERFAMILY Protein kinase-like (PK-like) 496 805 IPR011009 -
Lac4g2867 841 Pfam D-mannose binding lectin 82 186 IPR001480 -
Lac4g2867 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2867 841 CDD B_lectin 43 160 IPR001480 -
Lac4g2867 841 Gene3D Transferase(Phosphotransferase) domain 1 589 796 - -
Lac4g2867 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 792 - -
Lac4g2867 841 Gene3D - 30 158 IPR036426 -
Lac4g2867 841 SMART serkin_6 513 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2867 841 CDD STKc_IRAK 519 786 - -
Lac4g2867 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 189 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2812 Lac-Chr4:46774650 Lac4g2867 Lac-Chr4:47245401 1.00E-281 dispersed
Lac4g2867 Lac-Chr4:47245401 Lac5g1623 Lac-Chr5:33054586 1.20E-128 dispersed
Lac4g2867 Lac-Chr4:47245401 Lac10g0773 Lac-Chr10:6093429 9.80E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86158 PF07714 PK_Tyr_Ser-Thr 1.30E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2867 - - - 0.0