Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2872 ATGGATTTCTGGCCAGAGTTCCTCGCAAGCACTTGGGGTAGAGAGTTTGTCGCCGGTGGATTTGGTGGCGTCGCCGGCATAATCGCAGGCTACCCACTTGATACTCTTCGAATCAGGCAACAGCAATCAATTTCTGGTTCTGCCTTGAAAATCTTTCGCAATATCATTGCCAACGATGGCCCTGCTGGTCTTTACAGAGGCATGGCCGCTCCCTTGGCCTCTGTCACTTTCCAGAACGCCGCCGTGTTTCAGATCTACGCCGTTCTTTCTCGGGCATTCAACTCCTCCCAATCCAATGGTGACCCTCCTAGCTATAAGGCCGTGGCTTTTGGAGGAATTGGCACCGGAGCTCTTCAGAGCTTCATCCTGTCGCCGGTGGAGCTGGTGAAGATCCGCCTGCAATTGCAAAGTTCACAACAACAATTGATTTCTTCTTCTCACAGAGGCCCTGTGAGCGTCGCCAAAAGCATCTGCAAAACAGAAGGATTGAGAGGGATTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCGGCACATGGCATCTACTTTTGGACGTATGAGTGCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGTCAGGAGAGCGTCAGCACAATGCTGGTCGCCGGAGGGCTAGCCGGAGTTGCGAGCTGGGTTTTCTGTTATCCCTTGGATGTGTTGAAGACAAGAATTCAGGGTCAGACACAGAGTTCGTCTCGAAAGTACAATGGAATTGTTGATTGTCTAAGCAAGAGTGTGAGAGAAGAGGGTTATAGAGTGCTGTGGCGAGGGCTGGGGACTGCGGTTGCTAGAGCATTTGTGGTTAATGGGGCCATTTTTGCTGCTTATGAGATAAGTTTGAGGTGTTTGTTTCGCAATGGAAGCAATCAGACAAAGAAATGA 915 50.49 MDFWPEFLASTWGREFVAGGFGGVAGIIAGYPLDTLRIRQQQSISGSALKIFRNIIANDGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNSSQSNGDPPSYKAVAFGGIGTGALQSFILSPVELVKIRLQLQSSQQQLISSSHRGPVSVAKSICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYECMREQFHPGCRKTGQESVSTMLVAGGLAGVASWVFCYPLDVLKTRIQGQTQSSSRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAIFAAYEISLRCLFRNGSNQTKK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47263774 47264787 + Lag0002992.1 Lac4g2872 606404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2872 304 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 9 294 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Lac4g2872 304 FunFam Mitochondrial arginine transporter BAC2 11 304 - -
Lac4g2872 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Lac4g2872 304 Gene3D Mitochondrial carrier domain 110 303 IPR023395 -
Lac4g2872 304 Gene3D Mitochondrial carrier domain 3 109 IPR023395 -
Lac4g2872 304 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Lac4g2872 304 PRINTS Mitochondrial carrier protein signature 167 185 IPR002067 GO:0055085(InterPro)
Lac4g2872 304 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085(InterPro)
Lac4g2872 304 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
Lac4g2872 304 PRINTS Mitochondrial carrier protein signature 214 236 IPR002067 GO:0055085(InterPro)
Lac4g2872 304 Pfam Mitochondrial carrier protein 205 296 IPR018108 -
Lac4g2872 304 Pfam Mitochondrial carrier protein 109 195 IPR018108 -
Lac4g2872 304 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Lac4g2872 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 205 293 IPR018108 -
Lac4g2872 304 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 194 IPR018108 -
Lac4g2872 304 SUPERFAMILY Mitochondrial carrier 13 288 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2589 Lac-Chr2:39443175 Lac4g2872 Lac-Chr4:47263774 3.40E-08 dispersed
Lac4g2872 Lac-Chr4:47263774 Lac8g1479 Lac-Chr8:32088887 7.40E-15 dispersed
Lac10g0186 Lac-Chr10:1433878 Lac4g2872 Lac-Chr4:47263774 1.30E-11 transposed
Lac11g0737 Lac-Chr11:7733082 Lac4g2872 Lac-Chr4:47263774 3.60E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2872 K15109 - csv:101222165 530.02