Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2887 ATGGCCGTTGTCATGTCCGACAACCACCCCCCTCGCCGTCTCAAGAATGTTCCTTCTTCTCCGGCCCTCTCTCTCACCCTTGCTGGGGTTTTTGGGAATGCGGCGGCGGCGGCGGCGGCGACTGTGGACTTGGAGGTGGACGCGCCCGCGAGGAGAGACGACAGCTGCAGTGACAACTCCGAGCAGGCGGGATCCAGGTCGGCGGAAGATTTGGGGGCCGACCCTGATGATGAAGATGAAGATAAGTTACGGGGGAATAGAAAGAAGAGGAAGAATCGTCATACTTCAGGGCAAATCAGAGAAATGGAGATGTTGTTTAAAGAGTCACCTCATCCAGATGAGAAACAGCGGCAGCAACTCAGTGAAAAACTTGGGCTTTCTTCTAAGCAAATCAAGTTCTGGTTTCAGAATCGTAGAACCCAAATCAAGACCATTCACGAGCGTCATGAAAACGCTTTGTTGAAAGGAGAAATGGAGAAATTGCGAGAGGAAAACCTAGCGATGAGGGAAATGATGAACAAATCTTCTTGCCCTAAATGTGGCTATTCAGCTAATTCTACCTCCATTTCTATGGATTCCATTTTCACCTGTTCTGACCAACAACTAATAACTAAAATCACTCGACTCGAAGCTGAGGTCGAACGATTGCGAACGGCTCTGGAAATATACGCTCCAGCAGGGACATCAACGTCGCGTTCGGGGGAGAACGACGAGGGGATGGAGAGGAGGAGGAATTTGGAGAAATCGAAGACGATTTTCGGACTGGATAAAGCTAAGATTATGGAGATAGCGAAGCGAGCGATAGAGGAGGTGGTGAAAATGGCGGATTCCGGTGAGCCGCTTTGGGTTCGAAGCGTGGAAACAGGACGCGAACTACTGAATTACGATGTGTACGTGAAGGAATTCGCCGGCGAAAAGGAGCAGCCGAAGAGAGAAATCGAAGCGTCGAGGGAATCTGGCGTGGTGTTCGTTGATCTTCATCGATTGGTTCAGAGCTTGATGGATGTGGTTCAATGGAAGGAAATGTTTCCATCGATAATCTCGAAGGCGTCGACAATGGAGGTCGTCTGCCATGGCGACGGCACCACCAGAAATGGCGCCGTTCAACTGATGTTTGAAGAGCTCCAAATGCTCACCCCCACCCTTCCCCCAAGAGAGGTCAATTTCATTCGAAGTTGTCTGCAACTAAGCCCCGAAAAGTGGGTCGTCGCTGATGTCTCCATCGACAAACTCGAAGATAATATTGACTCATCCTCCTCCCTTTGCAAGAAACGCCCCTCTGGTTGCATCATCGAGGACACATCTAACGGCCATTGTAAGGTTACGTGGGTGGAGCATTGGGAATGCCAGAAGATCGGACTTCGCACAATATACCGAAACGTCGTCAACAGCGGTTTGATATTCGGAGCGAGGCATTGGATGGCGACACTGCAAATCCATTGTGAGTGGCAGGTTTTCTTCATGGCCACCAACGTTCCCATGAAGGATTCCACTGGAATCACCACTCTTGGTGGAAGAAAAAGTGTTCTTCGATTGGCTCAGAGAATGACATCTAGTTTTTATCAAGCCATTGGTGCTTCCAGCAGCCATACATGGACCAAGGTCCAGAGCAAAACAGGTGAAAGCATAAGGGTTGCTTCAAGGAAGAACTTGAACGACCCACGAGAACCTCTTGGTTTGATCTTGTGTGCAGTTGCTTCTGTCTGGCTTCCTGTTTCCCCTAAAGTCTTGTTCGAGTTCTTGATCGACGAAGCTCGACGAATCGAGTGGGATGTGATGTTAAATGGCGGTCCAGCTGAAACATTAGCAAACTTTGCCAAAGGACAGAATCGAGGCAATGTTGTTACTATCCAAGCAACAAAATCAGATGAAACCAACACATGGATTCTTCAAGATAGTTTAACAAATGAATATGAATCAACGGTGGTGTATGCTCAAGTTGACATTACGAGTATGCAATCTGTGATGACGGGGTGCGACCCAGGCAACATCACGATGTTACCAACAGGCTTCTCGATCCTCCCAGATGGGCATCCGTCTAGGCCTGTGGTTATCAGTTCTAGCAAAGACAAGGCAACAGAAGAAAGCTCTTTGCTAACAATAGCTTCTCAAATCTTAATTACTTCGTCTTCCACAGCTGAAATGACGTCGCAGTCAGTGGAGTATGTTAAAAATGTTATATCACATACGTTAAAGAATATTAAAGAGAAACTGCAAGATGATTATGATGATTGA 2235 47.79 MAVVMSDNHPPRRLKNVPSSPALSLTLAGVFGNAAAAAAATVDLEVDAPARRDDSCSDNSEQAGSRSAEDLGADPDDEDEDKLRGNRKKRKNRHTSGQIREMEMLFKESPHPDEKQRQQLSEKLGLSSKQIKFWFQNRRTQIKTIHERHENALLKGEMEKLREENLAMREMMNKSSCPKCGYSANSTSISMDSIFTCSDQQLITKITRLEAEVERLRTALEIYAPAGTSTSRSGENDEGMERRRNLEKSKTIFGLDKAKIMEIAKRAIEEVVKMADSGEPLWVRSVETGRELLNYDVYVKEFAGEKEQPKREIEASRESGVVFVDLHRLVQSLMDVVQWKEMFPSIISKASTMEVVCHGDGTTRNGAVQLMFEELQMLTPTLPPREVNFIRSCLQLSPEKWVVADVSIDKLEDNIDSSSSLCKKRPSGCIIEDTSNGHCKVTWVEHWECQKIGLRTIYRNVVNSGLIFGARHWMATLQIHCEWQVFFMATNVPMKDSTGITTLGGRKSVLRLAQRMTSSFYQAIGASSSHTWTKVQSKTGESIRVASRKNLNDPREPLGLILCAVASVWLPVSPKVLFEFLIDEARRIEWDVMLNGGPAETLANFAKGQNRGNVVTIQATKSDETNTWILQDSLTNEYESTVVYAQVDITSMQSVMTGCDPGNITMLPTGFSILPDGHPSRPVVISSSKDKATEESSLLTIASQILITSSSTAEMTSQSVEYVKNVISHTLKNIKEKLQDDYDD 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47334342 47339845 - Lag0003007.1 Lac4g2887 606419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2887 744 MobiDBLite consensus disorder prediction 96 120 - -
Lac4g2887 744 Pfam START domain 262 482 IPR002913 GO:0008289(InterPro)
Lac4g2887 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 739 IPR042160 -
Lac4g2887 744 SMART START_1 262 483 IPR002913 GO:0008289(InterPro)
Lac4g2887 744 MobiDBLite consensus disorder prediction 50 120 - -
Lac4g2887 744 Coils Coil 199 219 - -
Lac4g2887 744 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677(InterPro)
Lac4g2887 744 Coils Coil 151 171 - -
Lac4g2887 744 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Lac4g2887 744 FunFam Homeobox-leucine zipper protein HDG1 74 161 - -
Lac4g2887 744 SMART HOX_1 87 149 IPR001356 GO:0003677(InterPro)
Lac4g2887 744 SUPERFAMILY Bet v1-like 255 482 - -
Lac4g2887 744 CDD homeodomain 88 143 IPR001356 GO:0003677(InterPro)
Lac4g2887 744 Gene3D - 75 156 - -
Lac4g2887 744 ProSiteProfiles START domain profile. 253 486 IPR002913 GO:0008289(InterPro)
Lac4g2887 744 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac4g2887 744 SUPERFAMILY Bet v1-like 506 679 - -
Lac4g2887 744 CDD START_ArGLABRA2_like 257 482 - -
Lac4g2887 744 Gene3D - 260 481 IPR023393 -
Lac4g2887 744 FunFam Homeobox-leucine zipper protein GLABRA 2 262 482 - -
Lac4g2887 744 Pfam Homeodomain 88 143 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2887 Lac-Chr4:47334342 Lac9g2062 Lac-Chr9:40201422 3.90E-126 dispersed
Lac11g0744 Lac-Chr11:7786545 Lac4g2887 Lac-Chr4:47334342 1.20E-218 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23780 PF01852 START 3.00E-50 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2887 K09338 - csv:101218545 1127.08