Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2901 ATGGCCTGGTTCACCATTGGAAGCTTTCAAGATTCCTTCAGCTTGCGCTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCTTGCTCTTCGTTTTCGCCGGCGTTGGCTCCGCCATTGCCTTCGATAAAATAACATCGTCTGCAGCTCTAGATGCGGCGGGGCTAGTTGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTGTCAGTCGGAGCCAATATCTCCGGTGGCCACGTGAACCCGGCGGTGACGTTCGGGCTTCTTCTTGGGGATCAAATCAGCCTAATTACGACCATATTTTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACTGGCGGCCTGGCAGTTCCGGTCCACAGCTTGGCGGCCGGCGTTGGGGCGGCGGAAGGAGTTGTGATGGAGATTGTAATCACTTTCGGTCTGGTTTACACTGTCTATGCGACGGCGGCCGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATTGCCATCGGTTTCATCGTCGGAGCAAACATCTTGGCCGCCGGACCGTTTTCCGGCGGCTCGATGAACCCGGCCCGGTCGTTTGGACCGGCGGTGGTCAATGGGGACTTTCACGACAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCTTATGGGCCCAGCCCAATTCCAAACGATTTCTGA 747 54.89 MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAIAFDKITSSAALDAAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSLAAGVGAAEGVVMEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVNGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47447596 47449419 + Lag0003021.1 Lac4g2901 606433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2901 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Lac4g2901 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lac4g2901 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2901 248 FunFam Probable aquaporin TIP1-1 2 247 - -
Lac4g2901 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2901 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Lac4g2901 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lac4g2901 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2901 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2901 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2901 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2901 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2901 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g2901 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2901 Lac-Chr4:47447596 Lac9g2580 Lac-Chr9:44358020 1.20E-31 dispersed
Lac10g0340 Lac-Chr10:2670358 Lac4g2901 Lac-Chr4:47447596 1.30E-66 transposed
Lac10g2984 Lac-Chr10:44423477 Lac4g2901 Lac-Chr4:47447596 3.10E-75 transposed
Lac11g1646 Lac-Chr11:29522738 Lac4g2901 Lac-Chr4:47447596 1.20E-50 transposed
Lac11g2291 Lac-Chr11:38983589 Lac4g2901 Lac-Chr4:47447596 3.10E-96 transposed
Lac1g2185 Lac-Chr1:43310071 Lac4g2901 Lac-Chr4:47447596 5.60E-77 transposed
Lac8g2480 Lac-Chr8:42714981 Lac4g2901 Lac-Chr4:47447596 2.10E-71 transposed
Lac4g2901 Lac-Chr4:47447596 Lac6g1097 Lac-Chr6:10180397 5.70E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2901 K09873 - csv:101218611 451.44