Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2907 ATGGCAAACCCAAACAATTCAAATCCCCAAAACAAAAGCACCTCATTTCCCACTACTCCAACTCCACTTCCTTCTTCTTCGTCTCCGTTCACCCGCCCGGTTTCCGGCGCCGGAGCGGCCCAACCAGACCGTCGTCCTTCCGGCAAAAGAACCAGAGACTGCAACAAACATCCCGTCTTCAGAGGCGTACGGAAGCGAAGCTGGGGCAAATGGGTGTCGGAAATCCGGCAGCCACGTAAGAAGTCCCGAATTTGGCTCGGCACTTTTCCCACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCGCTGAGCATCAAAGGCGACTCGGCCATCCTCAATTACCCAGAACTCGCCGAGTTTCTGCCCCGCCCGGCGTCGCTCATGCCTCACGACATTCAAGCCGCCGCCGCCAAAGCGGCGGCGATGGTCACTTCATTGCCGTCGCCATCGCCGTCGGAGGAGGAGGAGCTGAGTGAGATCGTCGAGTTGCCGAATATAGAAGACGATTTTGGTACTGAGTCACTGAACGACTTCAAATTGGTTACCGAATCGTGGGAATGGTGGGAGTACGTGGCAATGCCCTTGGCGGCGGAATTCGGCTGCGGATATTTTTCGGACCAGACGGCGGCGGACGACAGTTTTTTCCCGACCAGCTTTTACGGTGCTCCGTGGGATTAA 681 57.56 MANPNNSNPQNKSTSFPTTPTPLPSSSSPFTRPVSGAGAAQPDRRPSGKRTRDCNKHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDVAALSIKGDSAILNYPELAEFLPRPASLMPHDIQAAAAKAAAMVTSLPSPSPSEEEELSEIVELPNIEDDFGTESLNDFKLVTESWEWWEYVAMPLAAEFGCGYFSDQTAADDSFFPTSFYGAPWD 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47475878 47476558 + Lag0003027.1 Lac4g2907 606439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2907 226 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2907 226 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2907 226 MobiDBLite consensus disorder prediction 1 21 - -
Lac4g2907 226 Pfam AP2 domain 58 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2907 226 MobiDBLite consensus disorder prediction 45 60 - -
Lac4g2907 226 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2907 226 SUPERFAMILY DNA-binding domain 59 116 IPR016177 GO:0003677(InterPro)
Lac4g2907 226 MobiDBLite consensus disorder prediction 1 61 - -
Lac4g2907 226 CDD AP2 60 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2907 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 157 IPR051032 -
Lac4g2907 226 SMART rav1_2 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g2907 226 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Lac4g2907 226 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0766 Lac-Chr11:8045501 Lac4g2907 Lac-Chr4:47475878 2.50E-45 dispersed
Lac2g2706 Lac-Chr2:41819029 Lac4g2907 Lac-Chr4:47475878 6.00E-23 dispersed
Lac4g0718 Lac-Chr4:18010968 Lac4g2907 Lac-Chr4:47475878 1.40E-24 dispersed
Lac4g2907 Lac-Chr4:47475878 Lac6g1292 Lac-Chr6:12963221 1.90E-36 dispersed
Lac2g0847 Lac-Chr2:6702233 Lac4g2907 Lac-Chr4:47475878 3.50E-43 wgd
Lac3g0945 Lac-Chr3:7626221 Lac4g2907 Lac-Chr4:47475878 1.60E-41 wgd
Lac4g2907 Lac-Chr4:47475878 Lac6g1089 Lac-Chr6:10126801 2.30E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23782 PF00847 AP2 3.60E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2907 K09286 - csv:101217361 310.457