Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2932 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTATTGGGGATGAAAAAGGAGAAAGACCCATCTGGGAATTCAAATTCAAATCCAACCACCGTCGCCGCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAATCCGGCAGAGATCCCGGCCAGACGCCGCCGCCTGCGGCGGCGGAGGCTGCTTGGTTCAGATCATACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCAGTCGCTGCTGCTACCGCCGCCGCCGCTGACGCTGCCGTCGCGGCTGCTCAGGCGGCGGTGGCCGTCGTCCGGCTGACGAGCCAAGGAAGAGGGTCTTTGTACATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTCAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAGGCTCTTTTCAGAGCTCAAACTGCAGTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAGAATAGGTTTATCCCCGAGATTCGGCATCGAAAATCTTCGGAACGGTTTGATGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTATAGCATCGTCTTATGAAACTTGCATCAACTCATTGGATGAGAGTCCCAAAATTGTCGAAATCGACACCTACCGAACCCGATCGAGGTCTCGTAGATACATCTCGGCATTGTCCGAATGCGGAGGAGATGATGTACCTCTCCAAGCGATCTCTTCGCCATTGCCATGTCCGAATCGACCTCGTGTCGCTGCGCCCGATTGCCACAATGTGCTTCGAGACTTCGAATGGTGCTTGATGGGGGAAGACTGCAAGTTCCCCACAGCTCACAGCACGCCACGGCTATCGAATTCATTCGCCTCTGGCAACGTGCCAGTCACCCCGTCGAAGAGCGTCTGCGGCGACAGCTTCTTTAGGCCATACATGAACTGCCCGAATTATATGGCGAACACGCAATCATTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTGTCATTGAATGAAATAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAAAATGCAGAGACCAAGTAACCAAATGCTGCAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAACATCATATGGTTTTTGA 1263 49.64 MGKATRWLKGLLGMKKEKDPSGNSNSNPTTVAADRKEKKRWSFAKSGRDPGQTPPPAAAEAAWFRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRHRKSSERFDETRSEFHSKRLSIASSYETCINSLDESPKIVEIDTYRTRSRSRRYISALSECGGDDVPLQAISSPLPCPNRPRVAAPDCHNVLRDFEWCLMGEDCKFPTAHSTPRLSNSFASGNVPVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVKMQRPSNQMLQEEDEEEEEEEEDEETSYGF 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47671807 47673619 + Lag0003052.1 Lac4g2932 606464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2932 420 Gene3D - 62 145 - -
Lac4g2932 420 MobiDBLite consensus disorder prediction 381 397 - -
Lac4g2932 420 MobiDBLite consensus disorder prediction 401 420 - -
Lac4g2932 420 Pfam Protein of unknown function (DUF4005) 312 397 IPR025064 -
Lac4g2932 420 PANTHER IQ-DOMAIN 5-RELATED 6 394 - -
Lac4g2932 420 MobiDBLite consensus disorder prediction 355 420 - -
Lac4g2932 420 ProSiteProfiles Zinc finger C3H1-type profile. 281 312 IPR000571 GO:0046872(InterPro)
Lac4g2932 420 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Lac4g2932 420 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Lac4g2932 420 ProSiteProfiles IQ motif profile. 120 148 - -
Lac4g2932 420 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Lac4g2932 420 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Lac4g2932 420 ProSiteProfiles IQ motif profile. 144 171 - -
Lac4g2932 420 MobiDBLite consensus disorder prediction 1 57 - -
Lac4g2932 420 Coils Coil 396 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2932 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2932 Lac-Chr4:47671807 Lac7g0706 Lac-Chr7:5672673 1.50E-29 dispersed
Lac11g0779 Lac-Chr11:8244628 Lac4g2932 Lac-Chr4:47671807 3.30E-73 wgd
Lac3g0966 Lac-Chr3:7855806 Lac4g2932 Lac-Chr4:47671807 1.40E-96 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2437 . 1 479 IQD Protein Family AT3G52290 54.6 1.4e-104 377.5
Lac3g1549 . 319 712 IQD Protein Family AT3G22190 58.3 1.4e-93 340.9
Lac2g0466 . 1 437 IQD Protein Family AT2G26180 59.5 7.0e-117 418.3
Lac1g3383 . 77 355 IQD Protein Family AT2G33990 52.3 1.5e-64 243.8
Lac5g2434 . 36 223 IQD Protein Family AT2G33990 57.1 1.7e-52 203.8
Lac5g2434 . 21 230 IQD Protein Family AT3G15050 56.6 2.8e-55 213.0
Lac8g2087 . 128 472 IQD Protein Family AT5G13460 52.4 4.2e-75 279.6
Lac7g0055 . 1 506 IQD Protein Family AT4G00820 55.1 3.9e-128 456.1
Lac12g1344 . 98 501 IQD Protein Family AT4G00820 56.8 1.0e-104 378.3
Lac7g0055 . 1 506 IQD Protein Family AT1G01110 52.4 4.4e-124 442.6
Lac12g1344 . 98 501 IQD Protein Family AT1G01110 53.0 3.4e-100 363.2
Lac4g2932 . 1 395 IQD Protein Family AT3G16490 52.3 1.0e-72 271.6
Lac3g0966 . 1 395 IQD Protein Family AT3G16490 51.8 8.7e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44