Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2932 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTATTGGGGATGAAAAAGGAGAAAGACCCATCTGGGAATTCAAATTCAAATCCAACCACCGTCGCCGCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAATCCGGCAGAGATCCCGGCCAGACGCCGCCGCCTGCGGCGGCGGAGGCTGCTTGGTTCAGATCATACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCAGTCGCTGCTGCTACCGCCGCCGCCGCTGACGCTGCCGTCGCGGCTGCTCAGGCGGCGGTGGCCGTCGTCCGGCTGACGAGCCAAGGAAGAGGGTCTTTGTACATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTCAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAGGCTCTTTTCAGAGCTCAAACTGCAGTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAGAATAGGTTTATCCCCGAGATTCGGCATCGAAAATCTTCGGAACGGTTTGATGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTATAGCATCGTCTTATGAAACTTGCATCAACTCATTGGATGAGAGTCCCAAAATTGTCGAAATCGACACCTACCGAACCCGATCGAGGTCTCGTAGATACATCTCGGCATTGTCCGAATGCGGAGGAGATGATGTACCTCTCCAAGCGATCTCTTCGCCATTGCCATGTCCGAATCGACCTCGTGTCGCTGCGCCCGATTGCCACAATGTGCTTCGAGACTTCGAATGGTGCTTGATGGGGGAAGACTGCAAGTTCCCCACAGCTCACAGCACGCCACGGCTATCGAATTCATTCGCCTCTGGCAACGTGCCAGTCACCCCGTCGAAGAGCGTCTGCGGCGACAGCTTCTTTAGGCCATACATGAACTGCCCGAATTATATGGCGAACACGCAATCATTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTGTCATTGAATGAAATAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAAAATGCAGAGACCAAGTAACCAAATGCTGCAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAACATCATATGGTTTTTGA 1263 49.64 MGKATRWLKGLLGMKKEKDPSGNSNSNPTTVAADRKEKKRWSFAKSGRDPGQTPPPAAAEAAWFRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRHRKSSERFDETRSEFHSKRLSIASSYETCINSLDESPKIVEIDTYRTRSRSRRYISALSECGGDDVPLQAISSPLPCPNRPRVAAPDCHNVLRDFEWCLMGEDCKFPTAHSTPRLSNSFASGNVPVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVKMQRPSNQMLQEEDEEEEEEEEDEETSYGF 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47671807 47673619 + Lag0003052.1 Lac4g2932 606464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2932 420 Gene3D - 62 145 - -
Lac4g2932 420 MobiDBLite consensus disorder prediction 381 397 - -
Lac4g2932 420 MobiDBLite consensus disorder prediction 401 420 - -
Lac4g2932 420 Pfam Protein of unknown function (DUF4005) 312 397 IPR025064 -
Lac4g2932 420 PANTHER IQ-DOMAIN 5-RELATED 6 394 - -
Lac4g2932 420 MobiDBLite consensus disorder prediction 355 420 - -
Lac4g2932 420 ProSiteProfiles Zinc finger C3H1-type profile. 281 312 IPR000571 GO:0046872(InterPro)
Lac4g2932 420 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Lac4g2932 420 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Lac4g2932 420 ProSiteProfiles IQ motif profile. 120 148 - -
Lac4g2932 420 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Lac4g2932 420 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Lac4g2932 420 ProSiteProfiles IQ motif profile. 144 171 - -
Lac4g2932 420 MobiDBLite consensus disorder prediction 1 57 - -
Lac4g2932 420 Coils Coil 396 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2932 Lac-Chr4:47671807 Lac7g0706 Lac-Chr7:5672673 1.50E-29 dispersed
Lac11g0779 Lac-Chr11:8244628 Lac4g2932 Lac-Chr4:47671807 3.30E-73 wgd
Lac3g0966 Lac-Chr3:7855806 Lac4g2932 Lac-Chr4:47671807 1.40E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2932 - - - 0.0