Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2939 ATGGCAGCTTTCTATAAATTCTCACCAATCAATGCAGCCAAAGATAGACCCAAGAGAAAGAGGATGATGATAATGGGAGCATCAGAGCATTGCCCTTTTGGTTTTTTCCTAAGTGCTTTGGCTTTGGCTCTTCTAGTTCCTGCTCAAGCTCTAGATCAGTCAGGTTTCATTAGTTTAGATTGTGGATCACCGGAAGGTACGAGATATACCGAAACATCGAATAATATTAGCTATGTTTCTGATGCACCCTACATAAAGAGTGGTGTAAGTGAAAGCATAGGTGCAAGATTTGGAGATGGAGGTCCCTATCCAAGGCAATTGAGGACACTCCGAAGCTTTCCTCAAGGAATCAGGAACTGTTACAATGTAAGCATTGTAAAGAGTACCAAATATTTGATTCGAGCGAGTTTCTTGTACGAGAATTACGATGGCCTGAATTTGCCACCGGTGTTTGATCTCTATATTGGGAATAGCTTTTGGGAGACAGTAAACTTCACTGACATATACATGGAACCTTCCATAGATCTCATACATATTACCTCCTCAAATGAAGTCCACATTTGTTTGATCAATACAGGGAATGGAGTACCAATTATTTCATGTTTAGAATTTAGACCTTTGCTCAATATCACTTACCAAACTGTGTCGGGATCCTTATCACTTTACTCTCGAGTCGACTTCGGTCCAACCGATTACCAAGAATACAGATTCCCTTTCGATGTTTATGATCGCATTTGGTCGACATTCAACTACTATGGACAAGAAACAGTTAGAACCAGTCCTATAATAGGTACTTTTCAGCACAACAAATACCAAGTGCCATCCATTGTCATGAAAACAGCTTCCACTCTAAAGGAGATTAGGTGGAAAACAAAAGATTCATATCAATACTATGTATATATGCACTTTGCTGAGGTTGTTAAGCTTCAACCTAACCAGAGTAGAGTGTTCAATATCACCCACAATGGGAATTTTTTTTATGGACCTCTAATTCCAAGTTACTTGTCCACACTAACTGTTTCCAATGGAAGTCCATTGGATGCAACAAATGAACATTTATTTTCTTTCATTTCGACCGGAAATGCAACGCTTCCTCCCATCATCAATGCTCTCGAGATCTATTATGTGAAAGACGTTTTGGAGTTAGAAGCAAATCAAGGAGATGTTGATGCAATCACCAATATCAAGTCAACTTATGGGATAAAGAGGGATTGGCAAGGAGATCCATGTGTGCCAATGGGATATCCATGGAAGGGATTAAATTGTAGCAATGTAGCTGCTCCAAGAATCACATCCTTGAATCTGTCAGCAAGTGGATTGACAGGTGAAATATCTTCTTACATATCAAATCTAACAATGTTGCAAACTCTGGACTTGTCTCACAATGAGTTGACTGGAGAGCTGCCAGAATTCTTAGCAAATTTGCCAAATTTAAGAGTTCTCATTTTAACCAGAAACAAGTTCACAGGCTCAGTTCCTGAGGTTCTCTTGCAAAGGGCTGAAGCTAAATCACTTACATTAAGTGTTGATGAAAATCCAGATCTTTGTACATCATTTAGATGTGATAACAAGAGCAAGAATAACAAGAAGAACAAGTACTTGGTTCTTATAATTCTCTCAAGTGTTATAGCTGTCCTCCTACCTATCCTAATGGTTACTCTAGTAATCTACAAAAGAAGAAAACAAAGAGAGAATCTCAAAAGATCAATCCAAGAAAGGTTACTTAAATCAAAGAACCAACAGGTTCTTTACTCTGAGATCTTGGTCATAACAGATAATTTGAAAACAACTATTGGAGAAGGAGGATTTGGAAAAGTATATTTGGGTGTACTGAGTGATAAAATTCAAGTTGCTATCAAACTGTTGTCTGCATCATCACGGCAAGGCTCTAATGAATTCAAAGCAGAGGCTCAAATACTGACCATTGTTCATCATAGAAATCTGGTTTCTCTCATTGGTTACTGTGATGAGGCTGAGAATAAGGCGCTCATTTATGAATTTATGGCTAATGGAAATCTACGGAAATATCTATCCGATTCAAGCACAGATGTATTGAATTGGACGCAAAGACTCCAAATTGCACTTGATGCAGCACAAGGGCTGGAATATTTGCACAATTCTTGCAAGCCACCTATAATTCACAGAGATTTGAAGACTTCAAATATCTTATTGAATGAAAGAATGCAGGCTAAAATATCAGATTTTGGACTCTCCAGGATATTGGCAAATGAAAATGATACTCATTTGTCCACGTGTCCAGCTGGCACCTTTGGATATGTCGACCCGACGATTCATTTGTCAGGAAACTTCACCAAGAAAAGCGATGTTTACAGTTTCGGGATCGTCTTATTTGAGCTGATCACGGGTCAGCCCGCCATAATCAAGGGCTCCGAAATCAACATCCACATAGTGGATTGGGCAAAGCCTCTGATTTTAGAAGGCAACAACCAAAGCATTAATTTATTATACAAAGTCAGCGGCTTCCCCATGTGCACCAAAGCAGTGAAGTTTCAAAGTCCGAACATGGCAAGCTCAGACGAAGATTTGTTCAACATGGACGGCAACGGCAATGGCGTAGCCCTCTTCTGCAATCGAGTTGCCTCAAATGGCATTCACCCGACACACTCCCAGAAACTTCTCCATAAATTATTCGCCAAAGGTCAACTTGCCTTTGTAACGTGTTGTTTAATCTCCCTTGCTGTGAAGGGAATTCCTCTTGTGTTGACTTTCTATTATCATCACAGGCTTCCCATATATGCCTCAAGTGGCTTGGCACTGGCTCTTCTACTTCTTGTTCAAGCTCAAGATCAGTCAGGGTTCGTTAGTTTAGATTGTGGATTACCAGAGGGTACGAGTTACACCGAAATGACAACCAAAATTAACTATGTTTCTGATGCATCCTTCATAAACAGTGGGGTAAGTCAAAGTGTAGCTTCAGCATATGGAGATGATACCTATCCCAGGCAATTGAGGAGGCTGAGAAGCTTCCCTCAAGGTATCAGAAACTGTTATAGTATAAGCATTGTAAAGGGTACTGAATACTTGATTCGAGCAAGTTTCTTGTATGGGAATTATGATGGTCTGGATTCACTACCGATATTTGATCTCTATATTGGGAATAGCTTGTGGGAGACATTAAACTTCACTGGAAATGGCATGGATGCTTTCATAGATCTCATACATGTAACCTCTTCAAATGTAGTTCACATCTGCCTGATCAATACAGGAAATGGAGTGCCATTTATTTCAGCATTAGAATTTAGACCTTCACTCAACATCACTTATCAAACAATGTCGGCATCCTTATCACTTCACACTCGAATGGACATGGGCTCAACAGATGGTCGAAATTACAGATTCCCTTTCGATGTTTATGATCGCATTTGGTCATCATTTAACTCCAATGAGTGGACACGAGTAAGCACCAACCGCACTATCGATCCTATTGTGGAAACTGGTCTCCAACTTCCATCCATTGTCATGGAAACTGCTTCCACTCCAAAAAACACAAGCAAGCCTCTGGAAATTTGTGGATGCAATTACCAACATCAAATCAACTTATGGAATAAAGAAGGATTGGCAAGGAGATCCATGTGTGCCAATGGATATCCCTGGAGTGGATTAAATTGTAGCTATGGAACTGCTCCAAGAATTATATCATTGAACCTATCTACAAGTGGACTGACTGGTAAAATATCTTCCTACCTATCAAATTTAACAATGTTACAAACTTTGGATTTGTCCAATAATGAGTTGACTGGAGAGCTGCCGGAATTTTTAGTAAATTTGCCAAATTTAAGAATCCTTTATTTAACCGGAAACAGGTTCACGGGCTTAATTCCTAAGGCTCTCTTGCAAAGGGCTGAAGCTGGATTACTTACATTAAGTGTGGGTGAAAATCCAGATCTTTGTACATCACTTAAATGTGATAGCAAGAGGAAGAATGACAAAAGGAAGTACTTGGCTCTTATAATTCTCTTCAGTATAATAGCCGTGCTCCTACCTATCCTTGTGGTTACTCTGGTAATCTACAAAAGGAGAAAACAAAGAGAGAATCTCAAAAGATCAATTCAAGAAAGGTTACTTAAGTCGAAGAACCAACAGGTTCGCTACTCTGAAATACTGGTTATCACAGATAACTTGAAGACAACTATTGGGGAAGGAGGTTTTGGAAAGGTATACTTGGGTGTACTGAGTGATAGAACCCAAGTTGCTGTCAAGTTGCTTTCTACGAGGTCACAGCAAGGCCACAATGAATTCAGAGCCGAGGCTCAAATATTAACAGTTGTTCATCATAGAAATCTGGTCTCTCTCGTTGGTTACTGTGATGAGGCTGAGAATAAGGCACTCATTTATGAATTCATGGGTAACGGAAATTTACGCAATCATCTATCTGATTCAAGCACAAAGGTGTTGAGTTGGATGGAAAGACTCCAAATTGCAATTGATGCAGCACAAGGGTTGGAATATTTACACAATGGTTGCGTGCCACCTATCATTCACAGAGATATGAAGTCTTCTAATATCCTATTGAATGATCAAATGCAAGCTAAAATATCTGATTTTGGACTATCCAGGGTATTTGCAAATGAAAATGATACTCATTTCTCCACATGTCCGGCTGGCACCTTTGGATATGTCGACCCGATGGTTCATTTATCTAGAAACTTTGTCAAGAAAAGTGATGTTTACAGCTTTGGAATTGTCTTGTTTGAGCTGATCACTGGACATCCCGCCATAATCAAGAGCTCTGAATACAATATCCACATAGTCGATTGGGTTAAGCCGCTGATTGCAGAAGGAAACGTTGAAAACATTGTTGATCCGAGGTTAGAAGGCTCCATAGAAAGTTGTTCTGCAAGGAAATTTATGGAGCTTGCACTATCATGCACATTGTCAACTTCAGCAGGAAGGCCTGACATGAGTGATGTGGTCTTACAACTCATTGAGTGTTTGAAGATGGTTCAAGACAGAACTCCACAAATACCACCTAACAATGCTGAGAACTTCTCACACAATTCAATTGGCTCTATATCATTTCTTGGTCCCAGATAG 5055 39.68 MAAFYKFSPINAAKDRPKRKRMMIMGASEHCPFGFFLSALALALLVPAQALDQSGFISLDCGSPEGTRYTETSNNISYVSDAPYIKSGVSESIGARFGDGGPYPRQLRTLRSFPQGIRNCYNVSIVKSTKYLIRASFLYENYDGLNLPPVFDLYIGNSFWETVNFTDIYMEPSIDLIHITSSNEVHICLINTGNGVPIISCLEFRPLLNITYQTVSGSLSLYSRVDFGPTDYQEYRFPFDVYDRIWSTFNYYGQETVRTSPIIGTFQHNKYQVPSIVMKTASTLKEIRWKTKDSYQYYVYMHFAEVVKLQPNQSRVFNITHNGNFFYGPLIPSYLSTLTVSNGSPLDATNEHLFSFISTGNATLPPIINALEIYYVKDVLELEANQGDVDAITNIKSTYGIKRDWQGDPCVPMGYPWKGLNCSNVAAPRITSLNLSASGLTGEISSYISNLTMLQTLDLSHNELTGELPEFLANLPNLRVLILTRNKFTGSVPEVLLQRAEAKSLTLSVDENPDLCTSFRCDNKSKNNKKNKYLVLIILSSVIAVLLPILMVTLVIYKRRKQRENLKRSIQERLLKSKNQQVLYSEILVITDNLKTTIGEGGFGKVYLGVLSDKIQVAIKLLSASSRQGSNEFKAEAQILTIVHHRNLVSLIGYCDEAENKALIYEFMANGNLRKYLSDSSTDVLNWTQRLQIALDAAQGLEYLHNSCKPPIIHRDLKTSNILLNERMQAKISDFGLSRILANENDTHLSTCPAGTFGYVDPTIHLSGNFTKKSDVYSFGIVLFELITGQPAIIKGSEINIHIVDWAKPLILEGNNQSINLLYKVSGFPMCTKAVKFQSPNMASSDEDLFNMDGNGNGVALFCNRVASNGIHPTHSQKLLHKLFAKGQLAFVTCCLISLAVKGIPLVLTFYYHHRLPIYASSGLALALLLLVQAQDQSGFVSLDCGLPEGTSYTEMTTKINYVSDASFINSGVSQSVASAYGDDTYPRQLRRLRSFPQGIRNCYSISIVKGTEYLIRASFLYGNYDGLDSLPIFDLYIGNSLWETLNFTGNGMDAFIDLIHVTSSNVVHICLINTGNGVPFISALEFRPSLNITYQTMSASLSLHTRMDMGSTDGRNYRFPFDVYDRIWSSFNSNEWTRVSTNRTIDPIVETGLQLPSIVMETASTPKNTSKPLEICGCNYQHQINLWNKEGLARRSMCANGYPWSGLNCSYGTAPRIISLNLSTSGLTGKISSYLSNLTMLQTLDLSNNELTGELPEFLVNLPNLRILYLTGNRFTGLIPKALLQRAEAGLLTLSVGENPDLCTSLKCDSKRKNDKRKYLALIILFSIIAVLLPILVVTLVIYKRRKQRENLKRSIQERLLKSKNQQVRYSEILVITDNLKTTIGEGGFGKVYLGVLSDRTQVAVKLLSTRSQQGHNEFRAEAQILTVVHHRNLVSLVGYCDEAENKALIYEFMGNGNLRNHLSDSSTKVLSWMERLQIAIDAAQGLEYLHNGCVPPIIHRDMKSSNILLNDQMQAKISDFGLSRVFANENDTHFSTCPAGTFGYVDPMVHLSRNFVKKSDVYSFGIVLFELITGHPAIIKSSEYNIHIVDWVKPLIAEGNVENIVDPRLEGSIESCSARKFMELALSCTLSTSAGRPDMSDVVLQLIECLKMVQDRTPQIPPNNAENFSHNSIGSISFLGPR 1684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47715242 47725619 - Lag0003059.1 Lac4g2939 606471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2939 1684 FunFam receptor-like protein kinase FERONIA 557 667 - -
Lac4g2939 1684 ProSitePatterns Protein kinases ATP-binding region signature. 1385 1407 IPR017441 GO:0005524(InterPro)
Lac4g2939 1684 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524(InterPro)
Lac4g2939 1684 Pfam Leucine rich repeat 428 488 IPR001611 GO:0005515(InterPro)
Lac4g2939 1684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1499 1511 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2939 1684 ProSiteProfiles Protein kinase domain profile. 592 862 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2939 1684 FunFam Leucine-rich repeat receptor-like kinase 1186 1306 - -
Lac4g2939 1684 CDD STKc_IRAK 1385 1645 - -
Lac4g2939 1684 SUPERFAMILY RNI-like 427 1307 - -
Lac4g2939 1684 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1455 1660 - -
Lac4g2939 1684 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 668 821 - -
Lac4g2939 1684 FunFam receptor-like protein kinase FERONIA 1344 1454 - -
Lac4g2939 1684 FunFam Leucine-rich repeat receptor-like kinase 387 518 - -
Lac4g2939 1684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2939 1684 Gene3D Phosphorylase Kinase; domain 1 1385 1455 - -
Lac4g2939 1684 Gene3D Phosphorylase Kinase; domain 1 598 668 - -
Lac4g2939 1684 ProSiteProfiles Leucine-rich repeat profile. 453 476 IPR001611 GO:0005515(InterPro)
Lac4g2939 1684 Pfam Protein tyrosine and serine/threonine kinase 594 790 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2939 1684 Pfam Protein tyrosine and serine/threonine kinase 1381 1644 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2939 1684 SUPERFAMILY Protein kinase-like (PK-like) 574 804 IPR011009 -
Lac4g2939 1684 ProSiteProfiles Protein kinase domain profile. 1379 1652 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2939 1684 Gene3D Transferase(Phosphotransferase) domain 1 1456 1668 - -
Lac4g2939 1684 Gene3D Transferase(Phosphotransferase) domain 1 669 836 - -
Lac4g2939 1684 PANTHER OS07G0107800 PROTEIN-RELATED 52 842 - -
Lac4g2939 1684 Gene3D Ribonuclease Inhibitor 389 515 IPR032675 -
Lac4g2939 1684 Gene3D Ribonuclease Inhibitor 1179 1291 IPR032675 -
Lac4g2939 1684 SMART LRR_typ_2 1263 1286 IPR003591 -
Lac4g2939 1684 SMART LRR_typ_2 475 499 IPR003591 -
Lac4g2939 1684 SMART LRR_typ_2 1239 1262 IPR003591 -
Lac4g2939 1684 SMART LRR_typ_2 451 474 IPR003591 -
Lac4g2939 1684 Pfam Leucine Rich repeats (2 copies) 1241 1277 IPR025875 -
Lac4g2939 1684 Pfam Malectin-like domain 59 376 IPR024788 -
Lac4g2939 1684 Pfam Malectin-like domain 943 1176 IPR024788 -
Lac4g2939 1684 SMART serkin_6 1379 1655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2939 1684 SMART serkin_6 592 892 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2939 1684 SUPERFAMILY Protein kinase-like (PK-like) 1361 1648 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1510 Lac-Chr12:28053114 Lac4g2939 Lac-Chr4:47715242 1.20E-32 dispersed
Lac12g1511 Lac-Chr12:28054676 Lac4g2939 Lac-Chr4:47715242 2.60E-117 dispersed
Lac4g2937 Lac-Chr4:47700412 Lac4g2939 Lac-Chr4:47715242 2.00E-291 dispersed
Lac4g2939 Lac-Chr4:47715242 Lac4g2941 Lac-Chr4:47739493 3.10E-203 dispersed
Lac4g2938 Lac-Chr4:47708930 Lac4g2939 Lac-Chr4:47715242 0.00E+00 tandem
Lac4g2939 Lac-Chr4:47715242 Lac4g2940 Lac-Chr4:47726613 5.00E-230 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86162 PF12819 Malectin_like 3.90E-95 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2939 - - - 0.0