Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2942 ATGTGTGTAGTGAATGCAATTAGGGACATTAAACAACATTACAAGCTGAGTAGAAATTGGGAAGGTGATCCTTGCCAACCAGTTGACTTCTCATGGGAGGGTTTGAATTGCAGCAATGCCCACCCTTGGCCAAGAATCGTTTCACCTAACTTGAGCAATAGCAACTTGATCGGAGATATTGCATCTTCAATCTCTAATCTCACTGCAATCAACTACTTAGATCTATCCTACAATGAGTTAGAAGGGGTAGTACCAGAATCCTTGGCTTTATTGCCACAACTGCAACTGCTAAATTTAAGTGGGAACAAGCTCACAGGTGTAGTTCCTGACGCTCTTCTCCACAAGTACAAAAATGGAACTTTAATTTTAAGTGTGGAAGGAAATCAGGAACTCTGTTGGTCACCACCATGCAAACACAAAAAGGAGTTGCCAATTTCTATTCCTATTCTATGCTCTATCATTGTGGCCCCCGTCCTTGTAATAATCCTCTTGGGAGTCATTCTTGTAATCTATACAAGAAAATCCAAAGATAATTCTATTGAATCGAAACATGATGGATCACTAAAATTGAAGATGAACAAACGGTACAGTTATTCAGAGGTTGTGAGTATTACTAATAACTTTGGAGTGGTTATTGGAGAAGGAGGATTTGGGAAAGTTTATTTAGGTGCTTTAAAAGACCAAACTAAGGTTGCTGTGAAAGTGCTTTCAGCATCATCGCAGCAAGGCTGTAAAGAATTTCGAGCAGAGGCACAACTCCTGATGGTTCTTCACCATCGCAACTTGGTCACTCTTCTTGGATACTGTGACGAAGGCAATCATAAGGCACTTATTTACGAATACATGGCTAATGGCAATTTAAAACAACATTTATCAGATACAAGTAGCAACACTCTTAATTGGATGGAAAGACTCCAAATTGCAGTGGATGCAGCGCAGGGATTGGAGTATCTACACAATGGTTGCAAACCCTCTATTATCCACAGAGATTTGAAACCTGCCAACATATTATTAGACAAGACAATGCAAGCCAAAATAGCCGATTTTGGATTGTCTAGAACTTTTACAACTGAAAGTGAATCTCAACTTTTAACTCGTCTGGCTGGTACGCCTGGATATATTGATCCTGGAACTCAAACATATGGAAATGTAAATAAGCAAAGCGATGTCTATAGCTTTGGAATTATCTTGCTCGAGTTGATCACTGGACAGCCTCCAATAGCGAGATCTTCTCAAGCCAATTTTCACAATCTAAACTGGTTGGAATCAATGATCAAAACAGGAGACATCCAAAACATAGTTGATTTGAAGTTAGGAGGAGAGTTTAACCAAAACTCAGCGTGGAAGATTATAGAACTTGGGATGTCATGCACACATCCAAATGCAGTTGAAAGGCCAGACATGAGCCATGTTTTGATGGAGCTCAAGGAGTGTTTGGCAGTCCATCAAACCACTTTAATGCAGAGTCGTATCATGTCCATAGGAATTCTCTCTGAATCAGAAATAGCTCCTTCTCCAAGGTAG 1524 39.96 MCVVNAIRDIKQHYKLSRNWEGDPCQPVDFSWEGLNCSNAHPWPRIVSPNLSNSNLIGDIASSISNLTAINYLDLSYNELEGVVPESLALLPQLQLLNLSGNKLTGVVPDALLHKYKNGTLILSVEGNQELCWSPPCKHKKELPISIPILCSIIVAPVLVIILLGVILVIYTRKSKDNSIESKHDGSLKLKMNKRYSYSEVVSITNNFGVVIGEGGFGKVYLGALKDQTKVAVKVLSASSQQGCKEFRAEAQLLMVLHHRNLVTLLGYCDEGNHKALIYEYMANGNLKQHLSDTSSNTLNWMERLQIAVDAAQGLEYLHNGCKPSIIHRDLKPANILLDKTMQAKIADFGLSRTFTTESESQLLTRLAGTPGYIDPGTQTYGNVNKQSDVYSFGIILLELITGQPPIARSSQANFHNLNWLESMIKTGDIQNIVDLKLGGEFNQNSAWKIIELGMSCTHPNAVERPDMSHVLMELKECLAVHQTTLMQSRIMSIGILSESEIAPSPR 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47750573 47753727 + Lag0003062.1 Lac4g2942 606474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2942 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 326 338 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2942 507 Pfam Protein tyrosine and serine/threonine kinase 210 474 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2942 507 PANTHER OS07G0107800 PROTEIN-RELATED 4 483 - -
Lac4g2942 507 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 282 488 - -
Lac4g2942 507 SUPERFAMILY L domain-like 28 116 - -
Lac4g2942 507 SUPERFAMILY Protein kinase-like (PK-like) 189 475 IPR011009 -
Lac4g2942 507 ProSitePatterns Protein kinases ATP-binding region signature. 212 234 IPR017441 GO:0005524(InterPro)
Lac4g2942 507 ProSiteProfiles Protein kinase domain profile. 206 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2942 507 FunFam Leucine-rich repeat receptor-like protein kinase 178 281 - -
Lac4g2942 507 Gene3D Ribonuclease Inhibitor 3 128 IPR032675 -
Lac4g2942 507 SMART serkin_6 206 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2942 507 FunFam Leucine-rich repeat receptor-like kinase 1 133 - -
Lac4g2942 507 Gene3D Phosphorylase Kinase; domain 1 178 281 - -
Lac4g2942 507 Gene3D Transferase(Phosphotransferase) domain 1 282 495 - -
Lac4g2942 507 CDD STKc_IRAK 212 477 - -
Lac4g2942 507 PRINTS Leucine-rich repeat signature 70 83 - -
Lac4g2942 507 PRINTS Leucine-rich repeat signature 91 104 - -
Lac4g2942 507 SMART LRR_typ_2 67 90 IPR003591 -
Lac4g2942 507 SMART LRR_typ_2 91 114 IPR003591 -
Lac4g2942 507 Pfam Leucine rich repeat 50 104 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2942 Lac-Chr4:47750573 Lac4g2944 Lac-Chr4:47765029 8.50E-133 dispersed
Lac4g2941 Lac-Chr4:47739493 Lac4g2942 Lac-Chr4:47750573 1.60E-242 tandem
Lac4g2942 Lac-Chr4:47750573 Lac4g2943 Lac-Chr4:47756405 9.70E-137 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86165 PF07714 PK_Tyr_Ser-Thr 1.70E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2942 - - - 0.0